miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28111 3' -58.3 NC_005887.1 + 25091 0.66 0.483004
Target:  5'- gGCCGccGC-CGuCGGAUUUCGCGacCGGUUg -3'
miRNA:   3'- -CGGCa-CGaGC-GCCUAGAGCGC--GUCAA- -5'
28111 3' -58.3 NC_005887.1 + 14715 0.66 0.472797
Target:  5'- gGCCGgg--CGCGGcgaUCGCGCAGg- -3'
miRNA:   3'- -CGGCacgaGCGCCuagAGCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 30862 0.66 0.4627
Target:  5'- cGCgGUGCgCGCcauuGAUCgCGCGCAGa- -3'
miRNA:   3'- -CGgCACGaGCGc---CUAGaGCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 29717 0.66 0.442853
Target:  5'- cGCCGUcGCgUCGCaGGAUCaCGCGCc--- -3'
miRNA:   3'- -CGGCA-CG-AGCG-CCUAGaGCGCGucaa -5'
28111 3' -58.3 NC_005887.1 + 18561 0.66 0.433111
Target:  5'- cGCCG-GCuUCGCGGGcgacaugCUCGuCGCGGc- -3'
miRNA:   3'- -CGGCaCG-AGCGCCUa------GAGC-GCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 19715 0.67 0.423495
Target:  5'- cCCGUaGCUCGcCGGAUCcUGCGCu--- -3'
miRNA:   3'- cGGCA-CGAGC-GCCUAGaGCGCGucaa -5'
28111 3' -58.3 NC_005887.1 + 14076 0.67 0.423495
Target:  5'- cGCCG-GCggUUGCGGAgg-CGCGCGGc- -3'
miRNA:   3'- -CGGCaCG--AGCGCCUagaGCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 11780 0.67 0.403725
Target:  5'- cGCCGUGCgCGCGGcgaagcgAUCUUGCGaCGc-- -3'
miRNA:   3'- -CGGCACGaGCGCC-------UAGAGCGC-GUcaa -5'
28111 3' -58.3 NC_005887.1 + 18204 0.67 0.386349
Target:  5'- cGCCGUGCUgaaCcCGGAUCU-GCGCAc-- -3'
miRNA:   3'- -CGGCACGA---GcGCCUAGAgCGCGUcaa -5'
28111 3' -58.3 NC_005887.1 + 14462 0.67 0.377404
Target:  5'- aCCGUGCaaggcgUCGUgucGGGcCUCGCGCAGa- -3'
miRNA:   3'- cGGCACG------AGCG---CCUaGAGCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 41596 0.68 0.368599
Target:  5'- cGCCGagcGcCUCGCGGAUCUUGCcgaGCAc-- -3'
miRNA:   3'- -CGGCa--C-GAGCGCCUAGAGCG---CGUcaa -5'
28111 3' -58.3 NC_005887.1 + 41952 0.68 0.359937
Target:  5'- cGgCGUGCUCGCGuGGUgcgUGCGCGGc- -3'
miRNA:   3'- -CgGCACGAGCGC-CUAga-GCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 32778 0.68 0.343042
Target:  5'- aGCCG-GCUCGUgcgcaGGAUCggCGCGCGc-- -3'
miRNA:   3'- -CGGCaCGAGCG-----CCUAGa-GCGCGUcaa -5'
28111 3' -58.3 NC_005887.1 + 16066 0.69 0.310992
Target:  5'- aCCG-GCUCGCGGcggGUCUgCGCGCGc-- -3'
miRNA:   3'- cGGCaCGAGCGCC---UAGA-GCGCGUcaa -5'
28111 3' -58.3 NC_005887.1 + 30394 0.71 0.240981
Target:  5'- aCCG-GCUgCGCGGAUCUCGUGUucgAGa- -3'
miRNA:   3'- cGGCaCGA-GCGCCUAGAGCGCG---UCaa -5'
28111 3' -58.3 NC_005887.1 + 3795 0.71 0.211185
Target:  5'- gGCCGUccaGCUugCGCGGAUCgcggucggCGCGCGGc- -3'
miRNA:   3'- -CGGCA---CGA--GCGCCUAGa-------GCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 24115 0.72 0.179669
Target:  5'- gGCCGUGCU-GCGcGUgUCGUGCGGUg -3'
miRNA:   3'- -CGGCACGAgCGCcUAgAGCGCGUCAa -5'
28111 3' -58.3 NC_005887.1 + 1481 0.73 0.152395
Target:  5'- cGCCGacgGCgUGCGGcgCUCGCGCGGc- -3'
miRNA:   3'- -CGGCa--CGaGCGCCuaGAGCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 26532 0.74 0.149885
Target:  5'- cCCGUGCUCgugGCcuaccacuucaagucGGAUCUCGCGCGGc- -3'
miRNA:   3'- cGGCACGAG---CG---------------CCUAGAGCGCGUCaa -5'
28111 3' -58.3 NC_005887.1 + 39242 0.74 0.136357
Target:  5'- -aCGUGUUCG-GGAUCUCGCGCGcGUc -3'
miRNA:   3'- cgGCACGAGCgCCUAGAGCGCGU-CAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.