miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28111 5' -51.8 NC_005887.1 + 41615 0.67 0.819026
Target:  5'- gCGGCCGGcgCGGcCCGUGAggaUCugcuGCGUCUg -3'
miRNA:   3'- gGUUGGUCa-GCU-GGCACU---AG----UGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 41825 0.67 0.80948
Target:  5'- aCGACC--UCGAUCGUGGUCuuCGaCCa -3'
miRNA:   3'- gGUUGGucAGCUGGCACUAGu-GCaGG- -5'
28111 5' -51.8 NC_005887.1 + 37089 0.68 0.789818
Target:  5'- gCCGACCAGUauccCGA-CGUGuUCGCGUa- -3'
miRNA:   3'- -GGUUGGUCA----GCUgGCACuAGUGCAgg -5'
28111 5' -51.8 NC_005887.1 + 8529 0.68 0.789818
Target:  5'- gCCGAgCGGUUGcGCCGggcgcucGAUCGCGUUg -3'
miRNA:   3'- -GGUUgGUCAGC-UGGCa------CUAGUGCAGg -5'
28111 5' -51.8 NC_005887.1 + 31339 0.68 0.789818
Target:  5'- gCCGACCGGgcCG-UCGUcGAUggccCACGUCCa -3'
miRNA:   3'- -GGUUGGUCa-GCuGGCA-CUA----GUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 7286 0.68 0.789818
Target:  5'- cCCGGCCgcccgcugugGGUCG-UCGUG-UCGcCGUCCg -3'
miRNA:   3'- -GGUUGG----------UCAGCuGGCACuAGU-GCAGG- -5'
28111 5' -51.8 NC_005887.1 + 27122 0.68 0.779724
Target:  5'- uUCAGCUucGUCGACuCGUcggcGAUCACGcggCCg -3'
miRNA:   3'- -GGUUGGu-CAGCUG-GCA----CUAGUGCa--GG- -5'
28111 5' -51.8 NC_005887.1 + 10907 0.68 0.779724
Target:  5'- gCAGCCGgcgcagaugacGUCGGCCGgccUGcUCACGcCCg -3'
miRNA:   3'- gGUUGGU-----------CAGCUGGC---ACuAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 25111 0.68 0.748536
Target:  5'- gCGACCGGUugucCGGCCGaGAUCcaGCG-CCg -3'
miRNA:   3'- gGUUGGUCA----GCUGGCaCUAG--UGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 36242 0.68 0.748536
Target:  5'- aCCAcuucGCCAGcucgugcgCGGCCGUGccuuCGUCCg -3'
miRNA:   3'- -GGU----UGGUCa-------GCUGGCACuaguGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 17807 0.68 0.748536
Target:  5'- aUCAGCCGcgCGGCCGUGccgaGCGUCUu -3'
miRNA:   3'- -GGUUGGUcaGCUGGCACuag-UGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 41771 0.69 0.737877
Target:  5'- aCGAUCgaGGUCGuGCCGacgugGGUCGCGUUCa -3'
miRNA:   3'- gGUUGG--UCAGC-UGGCa----CUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 29487 0.69 0.698676
Target:  5'- aCGACUAcUCGGCCGacgagcugucgagccUGAUCGCGaCCg -3'
miRNA:   3'- gGUUGGUcAGCUGGC---------------ACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 36573 0.69 0.694256
Target:  5'- cCCGAUgcugCGGUCGACCGcacgguuccggUGAUCGCGaaCCu -3'
miRNA:   3'- -GGUUG----GUCAGCUGGC-----------ACUAGUGCa-GG- -5'
28111 5' -51.8 NC_005887.1 + 36394 0.69 0.694256
Target:  5'- aCGGCCg--CGAUgGUGGUCugGUUCa -3'
miRNA:   3'- gGUUGGucaGCUGgCACUAGugCAGG- -5'
28111 5' -51.8 NC_005887.1 + 41392 0.7 0.683164
Target:  5'- cUCAACCGGcgucaCGACCGUGAU-GCGguguUCCu -3'
miRNA:   3'- -GGUUGGUCa----GCUGGCACUAgUGC----AGG- -5'
28111 5' -51.8 NC_005887.1 + 7473 0.7 0.683164
Target:  5'- gCGGCgGGUgCGACCGUGGcgaUCGuCGUCg -3'
miRNA:   3'- gGUUGgUCA-GCUGGCACU---AGU-GCAGg -5'
28111 5' -51.8 NC_005887.1 + 3613 0.7 0.680939
Target:  5'- --cGCCAGgccgcgcagcgcuUCGGCCGUGAaaaccugUCGcCGUCCa -3'
miRNA:   3'- gguUGGUC-------------AGCUGGCACU-------AGU-GCAGG- -5'
28111 5' -51.8 NC_005887.1 + 28672 0.71 0.627173
Target:  5'- aCCAuucGCCAGaCGAcaacCCGcGAUCACGcCCg -3'
miRNA:   3'- -GGU---UGGUCaGCU----GGCaCUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 34624 0.71 0.615945
Target:  5'- gCCAGCCAuUCG-CCGU--UCGCGUCg -3'
miRNA:   3'- -GGUUGGUcAGCuGGCAcuAGUGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.