Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28112 | 3' | -54.7 | NC_005887.1 | + | 14087 | 0.67 | 0.589409 |
Target: 5'- cGCCGGcggcgcGCCGgcgguuGCGGAGGCgcGCGGCGc- -3' miRNA: 3'- -UGGCUu-----CGGU------UGCUUCCG--UGCCGUua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 14320 | 0.69 | 0.448013 |
Target: 5'- gGCCGAcGCCGACaagcAGGUgaacGCGGCGAUc -3' miRNA: 3'- -UGGCUuCGGUUGcu--UCCG----UGCCGUUA- -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 14614 | 0.69 | 0.468658 |
Target: 5'- gGCCGucggcGCCGuCGAGGGCgcgcucACGGCAGc -3' miRNA: 3'- -UGGCuu---CGGUuGCUUCCG------UGCCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 14702 | 0.72 | 0.311177 |
Target: 5'- gUCGcGGCgGGCGGgccGGGCGCGGCGAUc -3' miRNA: 3'- uGGCuUCGgUUGCU---UCCGUGCCGUUA- -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 15591 | 0.69 | 0.427882 |
Target: 5'- cGCCGAAGCUgaGACGcAGcGCACGGgCGu- -3' miRNA: 3'- -UGGCUUCGG--UUGCuUC-CGUGCC-GUua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 15771 | 0.71 | 0.327453 |
Target: 5'- gGCCGcGGCC-GCGAAGGCGCagaaGCAGa -3' miRNA: 3'- -UGGCuUCGGuUGCUUCCGUGc---CGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 16232 | 0.67 | 0.55554 |
Target: 5'- gAUCGAuacgccGGCCGGCGAGcGCACgGGCAc- -3' miRNA: 3'- -UGGCU------UCGGUUGCUUcCGUG-CCGUua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 18039 | 0.68 | 0.500506 |
Target: 5'- cGCCGGacugacGGCCGACGAuuGGGCGaucgugaacaaGGCGAc -3' miRNA: 3'- -UGGCU------UCGGUUGCU--UCCGUg----------CCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 18096 | 0.66 | 0.600789 |
Target: 5'- gGCCGucAGuCCGGCGcgcguAAGcGCGCGGCGGUc -3' miRNA: 3'- -UGGCu-UC-GGUUGC-----UUC-CGUGCCGUUA- -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 18945 | 0.69 | 0.455182 |
Target: 5'- gGCCGucggcGGCCAauacgcacgauucuGCGAAGGgcaCGCGGCAGc -3' miRNA: 3'- -UGGCu----UCGGU--------------UGCUUCC---GUGCCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 19500 | 0.73 | 0.252255 |
Target: 5'- cCCGAuGCCGGCGAGcaucGGCGCaGGCGAc -3' miRNA: 3'- uGGCUuCGGUUGCUU----CCGUG-CCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 20008 | 0.7 | 0.418019 |
Target: 5'- cUCGAAGCgCcACGGAGGCugacaccggGCGGCAGc -3' miRNA: 3'- uGGCUUCG-GuUGCUUCCG---------UGCCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 24846 | 0.67 | 0.541033 |
Target: 5'- uGCgGAAGUCGGCGAucAGGUcauucaccguccagGCGGCGGc -3' miRNA: 3'- -UGgCUUCGGUUGCU--UCCG--------------UGCCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 24972 | 0.67 | 0.566775 |
Target: 5'- uGCCGAuccGGCUgcuGCGAAGaagaccgagcGCGCGGCAu- -3' miRNA: 3'- -UGGCU---UCGGu--UGCUUC----------CGUGCCGUua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 25085 | 0.68 | 0.511335 |
Target: 5'- uACCGGcuGGCCGGCGGccGC-CGGCGc- -3' miRNA: 3'- -UGGCU--UCGGUUGCUucCGuGCCGUua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 25494 | 0.69 | 0.427882 |
Target: 5'- aGCgGcGGCUcgGACGAuGGCGCGGCGGg -3' miRNA: 3'- -UGgCuUCGG--UUGCUuCCGUGCCGUUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 26332 | 0.68 | 0.48978 |
Target: 5'- gGCCGuGGCCGGCGcuGGC-CGGguGc -3' miRNA: 3'- -UGGCuUCGGUUGCuuCCGuGCCguUa -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 26398 | 0.66 | 0.635061 |
Target: 5'- cACCc-GGCCAGCGccGGCcACGGCc-- -3' miRNA: 3'- -UGGcuUCGGUUGCuuCCG-UGCCGuua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 26982 | 0.67 | 0.578068 |
Target: 5'- gUCGAcggcGGCCAGCGAcucGGGCGCaGCu-- -3' miRNA: 3'- uGGCU----UCGGUUGCU---UCCGUGcCGuua -5' |
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28112 | 3' | -54.7 | NC_005887.1 | + | 27763 | 0.66 | 0.63163 |
Target: 5'- uGCCGAGcgcGCCGGCGA-GGUagagcgccaugacgACGGCGc- -3' miRNA: 3'- -UGGCUU---CGGUUGCUuCCG--------------UGCCGUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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