miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28114 3' -53.2 NC_005887.1 + 23488 0.67 0.703267
Target:  5'- cGCccuuGAUCugcuuGCCGACGUGUUcgGC-CGCGCu -3'
miRNA:   3'- -CGu---CUAG-----UGGCUGUACAG--CGaGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 15976 0.67 0.703267
Target:  5'- cGCAGuUCGUCGAgGaUGUCGUgcgCGCGCa -3'
miRNA:   3'- -CGUCuAGUGGCUgU-ACAGCGa--GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 18146 0.67 0.692073
Target:  5'- cGCGGGcCGCCGACGUcGUgccgaagcUGCUCgGCAUg -3'
miRNA:   3'- -CGUCUaGUGGCUGUA-CA--------GCGAG-CGUG- -5'
28114 3' -53.2 NC_005887.1 + 13366 0.67 0.692073
Target:  5'- -aAGAgC-CCGGCgAUGgCGCUCGCGCu -3'
miRNA:   3'- cgUCUaGuGGCUG-UACaGCGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 18415 0.67 0.692073
Target:  5'- cGCGGAagUCGCCcgaacgucGCAUGUCGCcgaUGCGCc -3'
miRNA:   3'- -CGUCU--AGUGGc-------UGUACAGCGa--GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 15584 0.67 0.692073
Target:  5'- cGCuGAUCGCCGAagcUGagaCGCagCGCACg -3'
miRNA:   3'- -CGuCUAGUGGCUgu-ACa--GCGa-GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 15065 0.67 0.681946
Target:  5'- gGCAGGUgucgccgaagggagcCGCCGGCGUGUCGCagaUgaugcccgagaaccUGCGCa -3'
miRNA:   3'- -CGUCUA---------------GUGGCUGUACAGCG---A--------------GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 42107 0.67 0.680818
Target:  5'- aGCAGGUCcauguCCGcCuUGUaCGCaUCGCGCg -3'
miRNA:   3'- -CGUCUAGu----GGCuGuACA-GCG-AGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 41525 0.67 0.680818
Target:  5'- aGCAGAuccUCGCgCGGCGUGcCGagcagCGCAUa -3'
miRNA:   3'- -CGUCU---AGUG-GCUGUACaGCga---GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 6392 0.67 0.680818
Target:  5'- gGCAGAaCGCCGcCGUacaGCUUGCGCc -3'
miRNA:   3'- -CGUCUaGUGGCuGUAcagCGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 17191 0.67 0.680818
Target:  5'- cGCGGccgCACgCGGCaAUGUUGCgcCGCGCa -3'
miRNA:   3'- -CGUCua-GUG-GCUG-UACAGCGa-GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 3953 0.67 0.680818
Target:  5'- cGCAGAagcUCGUCGACccgccGUUGCUCGCGa -3'
miRNA:   3'- -CGUCU---AGUGGCUGua---CAGCGAGCGUg -5'
28114 3' -53.2 NC_005887.1 + 41684 0.67 0.679689
Target:  5'- aGCAGAUCcucacggGCCGcGCcgGcCGC-CGCACc -3'
miRNA:   3'- -CGUCUAG-------UGGC-UGuaCaGCGaGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 15908 0.67 0.669513
Target:  5'- cGCAGcUgGCCGACcUG-CGUUcCGCGCg -3'
miRNA:   3'- -CGUCuAgUGGCUGuACaGCGA-GCGUG- -5'
28114 3' -53.2 NC_005887.1 + 40318 0.68 0.646802
Target:  5'- gGCAGcacgaacauAUUGCCGAagccGUCGCUCgGCACg -3'
miRNA:   3'- -CGUC---------UAGUGGCUgua-CAGCGAG-CGUG- -5'
28114 3' -53.2 NC_005887.1 + 17065 0.68 0.644526
Target:  5'- gGCGGA-CGCCGuCAUGccgcugcucgacCGCUCGCAa -3'
miRNA:   3'- -CGUCUaGUGGCuGUACa-----------GCGAGCGUg -5'
28114 3' -53.2 NC_005887.1 + 16312 0.68 0.635419
Target:  5'- cGCAGGaCGCCGGCcuguucgagGUCGC-CGCGa -3'
miRNA:   3'- -CGUCUaGUGGCUGua-------CAGCGaGCGUg -5'
28114 3' -53.2 NC_005887.1 + 13196 0.68 0.635419
Target:  5'- aGCAGGcCGCCGGCcgacguGUGUCGCUgcugaCGC-Ca -3'
miRNA:   3'- -CGUCUaGUGGCUG------UACAGCGA-----GCGuG- -5'
28114 3' -53.2 NC_005887.1 + 416 0.68 0.624033
Target:  5'- uCAGcUCACCGcgcACAUGcgacgGCUCGCGCa -3'
miRNA:   3'- cGUCuAGUGGC---UGUACag---CGAGCGUG- -5'
28114 3' -53.2 NC_005887.1 + 17968 0.68 0.624033
Target:  5'- cGCGGGcUCGCCGGCAUcg-GC-CGCACc -3'
miRNA:   3'- -CGUCU-AGUGGCUGUAcagCGaGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.