Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28114 | 5' | -61.4 | NC_005887.1 | + | 18089 | 0.67 | 0.251386 |
Target: 5'- -aGUCCGGcGCgcguaAGCGCGCGGCGGu--- -3' miRNA: 3'- agCGGGCU-CG-----UCGCGCGCCGCUucaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 24036 | 0.68 | 0.238821 |
Target: 5'- gCGCUCGAGCAGUGgGC--CGAGGUc -3' miRNA: 3'- aGCGGGCUCGUCGCgCGccGCUUCAa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 40161 | 0.68 | 0.238821 |
Target: 5'- cUCGCCgcgugUGAGCuGCGCGaCGGCacGAAGg- -3' miRNA: 3'- -AGCGG-----GCUCGuCGCGC-GCCG--CUUCaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 18618 | 0.68 | 0.238821 |
Target: 5'- gUUGCUCG-GCAGCGCGauCGGCGGc--- -3' miRNA: 3'- -AGCGGGCuCGUCGCGC--GCCGCUucaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 1474 | 0.68 | 0.232737 |
Target: 5'- -aGCCCGAcGCcgacGGCGUGCGGCGc---- -3' miRNA: 3'- agCGGGCU-CG----UCGCGCGCCGCuucaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 13567 | 0.68 | 0.226785 |
Target: 5'- cCGCCCGAGCAG-GC-CGacgacGCGAAGg- -3' miRNA: 3'- aGCGGGCUCGUCgCGcGC-----CGCUUCaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 633 | 0.68 | 0.220962 |
Target: 5'- -aGCCgCGAugaaAGCGCGCGGCGAGc-- -3' miRNA: 3'- agCGG-GCUcg--UCGCGCGCCGCUUcaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 14090 | 0.68 | 0.215267 |
Target: 5'- cUGCgCCG-GCGGCGCGCcGGCGGu--- -3' miRNA: 3'- aGCG-GGCuCGUCGCGCG-CCGCUucaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 28039 | 0.69 | 0.209698 |
Target: 5'- -gGCCCGAGcCGGCG-GCGGC-AAGa- -3' miRNA: 3'- agCGGGCUC-GUCGCgCGCCGcUUCaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 33707 | 0.69 | 0.204254 |
Target: 5'- cUCGCCgaGcGCAGCGCGCGcuacGgGAAGUUc -3' miRNA: 3'- -AGCGGg-CuCGUCGCGCGC----CgCUUCAA- -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 15045 | 0.69 | 0.198933 |
Target: 5'- -gGCCUGcGCGGCcuGCGCGGCGuAGg- -3' miRNA: 3'- agCGGGCuCGUCG--CGCGCCGCuUCaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 35393 | 0.69 | 0.198933 |
Target: 5'- cCGgCCGccGCGGCGCGCGGCaguGGAGc- -3' miRNA: 3'- aGCgGGCu-CGUCGCGCGCCG---CUUCaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 24953 | 0.69 | 0.193733 |
Target: 5'- gCGCgCGGGCcgccuuGCGCGCGGCcgcGAGGg- -3' miRNA: 3'- aGCGgGCUCGu-----CGCGCGCCG---CUUCaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 30765 | 0.69 | 0.193733 |
Target: 5'- -aGCUCGAcCGuGCGCGCGGCG-AGUUc -3' miRNA: 3'- agCGGGCUcGU-CGCGCGCCGCuUCAA- -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 13609 | 0.69 | 0.193733 |
Target: 5'- aUCGCugCUGGcagcGCGGCGCGCGGCGGc--- -3' miRNA: 3'- -AGCG--GGCU----CGUCGCGCGCCGCUucaa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 41359 | 0.69 | 0.183689 |
Target: 5'- cUUGCCCGgcggcAGCAGCGCGCccguGCGcAGGUc -3' miRNA: 3'- -AGCGGGC-----UCGUCGCGCGc---CGC-UUCAa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 11135 | 0.69 | 0.183689 |
Target: 5'- aUCGUuuGAGCAGCgGCGCGGaaaucAGUg -3' miRNA: 3'- -AGCGggCUCGUCG-CGCGCCgcu--UCAa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 2363 | 0.7 | 0.178842 |
Target: 5'- -aGCCCGGGUAGauCuCGGCGAGGUg -3' miRNA: 3'- agCGGGCUCGUCgcGcGCCGCUUCAa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 16222 | 0.7 | 0.174108 |
Target: 5'- aUCGCUCGcGCacucGGCGCGCcggugguuGGCGggGUg -3' miRNA: 3'- -AGCGGGCuCG----UCGCGCG--------CCGCuuCAa -5' |
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28114 | 5' | -61.4 | NC_005887.1 | + | 32862 | 0.7 | 0.174108 |
Target: 5'- gUGCCCGugaAGCGGCGCGCGcCGAu--- -3' miRNA: 3'- aGCGGGC---UCGUCGCGCGCcGCUucaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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