Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 41664 | 0.68 | 0.435575 |
Target: 5'- gCCGGCcgccgcaccuGGGCCGCCGCugGccgacaggaacgucUCGGcgCu -3' miRNA: 3'- -GGCUG----------UCCGGUGGCGugC--------------AGCCaaGc -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 41019 | 0.66 | 0.549722 |
Target: 5'- -gGACAGGCgucuacuggCGCCGCGCGgugcaGG-UCGa -3' miRNA: 3'- ggCUGUCCG---------GUGGCGUGCag---CCaAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 40913 | 0.74 | 0.196075 |
Target: 5'- gCCGA-AGGCUACCGCGCGcgcacCGaGUUCGg -3' miRNA: 3'- -GGCUgUCCGGUGGCGUGCa----GC-CAAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 40859 | 0.68 | 0.428947 |
Target: 5'- aCCGGCGaaGCCGCCGCGCG-CG--UCGa -3' miRNA: 3'- -GGCUGUc-CGGUGGCGUGCaGCcaAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 40726 | 0.68 | 0.457761 |
Target: 5'- aCGACuucgAGGUCGCCGCccGCGUCGaggCGa -3' miRNA: 3'- gGCUG----UCCGGUGGCG--UGCAGCcaaGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 39836 | 0.66 | 0.581727 |
Target: 5'- gCGACGGGCCGCCgucGCACaUCaa-UCGa -3' miRNA: 3'- gGCUGUCCGGUGG---CGUGcAGccaAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 38995 | 0.66 | 0.571008 |
Target: 5'- gCUGGCGGauuguuucguGCCACCGCGCaGUCGacggCGg -3' miRNA: 3'- -GGCUGUC----------CGGUGGCGUG-CAGCcaa-GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 36573 | 0.66 | 0.571008 |
Target: 5'- cCCGAUgcugcGGUCgACCGCACGguucCGGUgaUCGc -3' miRNA: 3'- -GGCUGu----CCGG-UGGCGUGCa---GCCA--AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 36298 | 0.66 | 0.528687 |
Target: 5'- uCCGGuuGGCCGauCUGCGCGgCGG-UCGa -3' miRNA: 3'- -GGCUguCCGGU--GGCGUGCaGCCaAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 35150 | 0.67 | 0.477535 |
Target: 5'- aCgGACGGGCgGCCGuCACGcugcacgaucUCGGccUCGa -3' miRNA: 3'- -GgCUGUCCGgUGGC-GUGC----------AGCCa-AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 33942 | 0.68 | 0.457761 |
Target: 5'- gCCGACGGcGCUcgGCgaGCACGUCGcGUgCGg -3' miRNA: 3'- -GGCUGUC-CGG--UGg-CGUGCAGC-CAaGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 33536 | 0.66 | 0.560337 |
Target: 5'- aCCGugAGcGCCugCuuCugGUCGGgugCGa -3' miRNA: 3'- -GGCugUC-CGGugGc-GugCAGCCaa-GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 32831 | 0.66 | 0.560337 |
Target: 5'- gCCGACGugauGGCCGCCGUGCa--GGUcaagCGg -3' miRNA: 3'- -GGCUGU----CCGGUGGCGUGcagCCAa---GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 32439 | 0.72 | 0.256584 |
Target: 5'- gCCGGCGGcgaucagguugcgcaGCCACUGCGCGgcgugCGGaUCGa -3' miRNA: 3'- -GGCUGUC---------------CGGUGGCGUGCa----GCCaAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 29879 | 0.66 | 0.581727 |
Target: 5'- gCGGCAGGCCGagCGUACGgCGuUUCu -3' miRNA: 3'- gGCUGUCCGGUg-GCGUGCaGCcAAGc -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 27985 | 0.68 | 0.44804 |
Target: 5'- gCCGGCucGGGCCgaAUCGCGuCGUCGGccggCGu -3' miRNA: 3'- -GGCUG--UCCGG--UGGCGU-GCAGCCaa--GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 25086 | 0.79 | 0.086231 |
Target: 5'- -gGugAGGCCGCCGC-CGUCGGauUUCGc -3' miRNA: 3'- ggCugUCCGGUGGCGuGCAGCC--AAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 25076 | 0.66 | 0.571008 |
Target: 5'- gCCGGC-GGCCGCCGgCGCGagcugacgcUCGGc--- -3' miRNA: 3'- -GGCUGuCCGGUGGC-GUGC---------AGCCaagc -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 24953 | 0.68 | 0.438434 |
Target: 5'- gCGcGCGGGCCGCCuuGCGCG-CGGccgCGa -3' miRNA: 3'- gGC-UGUCCGGUGG--CGUGCaGCCaa-GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 24938 | 0.68 | 0.457761 |
Target: 5'- gCGGCAucGGCCGCCGcCugGaCGGUg-- -3' miRNA: 3'- gGCUGU--CCGGUGGC-GugCaGCCAagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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