Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28116 | 5' | -56.8 | NC_005887.1 | + | 6309 | 1.08 | 0.00057 |
Target: 5'- gCCCACACCGACGUGGCGCAAGCUGUAc -3' miRNA: 3'- -GGGUGUGGCUGCACCGCGUUCGACAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 25080 | 0.75 | 0.143547 |
Target: 5'- -gCugGCCGGCGgccgccGGCGCGAGCUGa- -3' miRNA: 3'- ggGugUGGCUGCa-----CCGCGUUCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 8209 | 0.75 | 0.156082 |
Target: 5'- cCCgCGCACCGACac-GCGCGGGCUGUu -3' miRNA: 3'- -GG-GUGUGGCUGcacCGCGUUCGACAu -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 25740 | 0.73 | 0.22245 |
Target: 5'- aCCCACugACCGACGaUGGCGaCGcGCUGc- -3' miRNA: 3'- -GGGUG--UGGCUGC-ACCGC-GUuCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 20970 | 0.72 | 0.230881 |
Target: 5'- uCCCGCGCUGGCGcuUGGCGcCAcgcucgcaccuauucAGCUGUu -3' miRNA: 3'- -GGGUGUGGCUGC--ACCGC-GU---------------UCGACAu -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 3717 | 0.71 | 0.274296 |
Target: 5'- gCCgCGCGCCGACcgcgauccGCGCAAGCUGg- -3' miRNA: 3'- -GG-GUGUGGCUGcac-----CGCGUUCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 23226 | 0.71 | 0.274296 |
Target: 5'- gCCACGCCGACGgcaCGCGAGCg--- -3' miRNA: 3'- gGGUGUGGCUGCaccGCGUUCGacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 11071 | 0.71 | 0.28649 |
Target: 5'- uUCCGCGCCGcuGCucaaacgauuccgcGUGGCGCAucGGCUGg- -3' miRNA: 3'- -GGGUGUGGC--UG--------------CACCGCGU--UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 6807 | 0.71 | 0.287952 |
Target: 5'- cCUCACGCUGcgcgacuggcgcuACGUGGCGCGGGuCUGc- -3' miRNA: 3'- -GGGUGUGGC-------------UGCACCGCGUUC-GACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 35894 | 0.71 | 0.296099 |
Target: 5'- aUCUACGCCGACGcGGCGCAcgaggaacacAGCg--- -3' miRNA: 3'- -GGGUGUGGCUGCaCCGCGU----------UCGacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 42068 | 0.7 | 0.319226 |
Target: 5'- gCgACACuCGACGUGGgcCGCAGGCcGUGc -3' miRNA: 3'- gGgUGUG-GCUGCACC--GCGUUCGaCAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 5142 | 0.7 | 0.319226 |
Target: 5'- aCCGCGcugcCCGACGUcGGCGCGccGCUGa- -3' miRNA: 3'- gGGUGU----GGCUGCA-CCGCGUu-CGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 36034 | 0.7 | 0.335383 |
Target: 5'- aCCUcgGCGCCGGCGaGGCGCAAGg---- -3' miRNA: 3'- -GGG--UGUGGCUGCaCCGCGUUCgacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 19499 | 0.69 | 0.360721 |
Target: 5'- uCCCgAUGCCGGCGagcaucGGCGCAGGCg--- -3' miRNA: 3'- -GGG-UGUGGCUGCa-----CCGCGUUCGacau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 23517 | 0.69 | 0.369459 |
Target: 5'- gCCGCGCUGACGaacGCGCGggugAGCUGg- -3' miRNA: 3'- gGGUGUGGCUGCac-CGCGU----UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 23367 | 0.68 | 0.40583 |
Target: 5'- gCCGCAgugCGGCGUuguucuucGGCGCGGGCUGc- -3' miRNA: 3'- gGGUGUg--GCUGCA--------CCGCGUUCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 32333 | 0.68 | 0.405831 |
Target: 5'- aCCaCACGCCGAUGccGGCgaagaaaugGCAcuGGCUGUAu -3' miRNA: 3'- -GG-GUGUGGCUGCa-CCG---------CGU--UCGACAU- -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 15711 | 0.68 | 0.405831 |
Target: 5'- uUCCGcCGCCGGCGUGaaggagcugacGCGCcAGCUGc- -3' miRNA: 3'- -GGGU-GUGGCUGCAC-----------CGCGuUCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 40681 | 0.68 | 0.415269 |
Target: 5'- uCCUGCACCuGGCGcGcGCGCAcGGCUGg- -3' miRNA: 3'- -GGGUGUGG-CUGCaC-CGCGU-UCGACau -5' |
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28116 | 5' | -56.8 | NC_005887.1 | + | 27146 | 0.68 | 0.415269 |
Target: 5'- aUCACgcgGCCGaACGgccacgGGCGCGGGUUGUGc -3' miRNA: 3'- gGGUG---UGGC-UGCa-----CCGCGUUCGACAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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