miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28117 3' -60.7 NC_005887.1 + 15221 0.66 0.382919
Target:  5'- uUCGCCaugCCGUCGAGcgccugCAUGGGGUc- -3'
miRNA:   3'- -AGCGGg--GGCGGCUUaa----GUGCCCCGac -5'
28117 3' -60.7 NC_005887.1 + 40055 0.66 0.373378
Target:  5'- aCGCCCgauaCCGuuCCGAucgUCcggcgggGCGGGGCUGc -3'
miRNA:   3'- aGCGGG----GGC--GGCUua-AG-------UGCCCCGAC- -5'
28117 3' -60.7 NC_005887.1 + 35015 0.66 0.365693
Target:  5'- gCGCaCgCCCGCCGAGUUCGaagcCGGcgacGGCa- -3'
miRNA:   3'- aGCG-G-GGGCGGCUUAAGU----GCC----CCGac -5'
28117 3' -60.7 NC_005887.1 + 25093 0.66 0.357283
Target:  5'- cCGCCgCCGUCGGAuUUCGCGaccGGUUGu -3'
miRNA:   3'- aGCGGgGGCGGCUU-AAGUGCc--CCGAC- -5'
28117 3' -60.7 NC_005887.1 + 17429 0.66 0.34901
Target:  5'- -aGCCCUCGCCGAA--CugGcGGUUGu -3'
miRNA:   3'- agCGGGGGCGGCUUaaGugCcCCGAC- -5'
28117 3' -60.7 NC_005887.1 + 39078 0.66 0.34901
Target:  5'- -aGCCgCCGUCGAcugCGCGGuGGCa- -3'
miRNA:   3'- agCGGgGGCGGCUuaaGUGCC-CCGac -5'
28117 3' -60.7 NC_005887.1 + 14756 0.67 0.340874
Target:  5'- cCGCCCgCCGCgacgagccCGAucgUGCGGGGCa- -3'
miRNA:   3'- aGCGGG-GGCG--------GCUuaaGUGCCCCGac -5'
28117 3' -60.7 NC_005887.1 + 27590 0.67 0.336059
Target:  5'- cCGCCCaugaccgcCCGCCGcguAUUCACgccaugggaguaccaGGGGCUc -3'
miRNA:   3'- aGCGGG--------GGCGGCu--UAAGUG---------------CCCCGAc -5'
28117 3' -60.7 NC_005887.1 + 4465 0.69 0.25338
Target:  5'- gCGCCUUCGCCGGcgcgcauugccuuGUUCAacGGGCUGu -3'
miRNA:   3'- aGCGGGGGCGGCU-------------UAAGUgcCCCGAC- -5'
28117 3' -60.7 NC_005887.1 + 18238 0.7 0.21228
Target:  5'- aUCGCCUCggccaCGCCGGGcaccgUCACGGGcgaGCUGa -3'
miRNA:   3'- -AGCGGGG-----GCGGCUUa----AGUGCCC---CGAC- -5'
28117 3' -60.7 NC_005887.1 + 5466 0.7 0.201487
Target:  5'- gCGCCgCCCGCCG-GUUCAcCGGucgcGCUGg -3'
miRNA:   3'- aGCGG-GGGCGGCuUAAGU-GCCc---CGAC- -5'
28117 3' -60.7 NC_005887.1 + 37759 0.72 0.151959
Target:  5'- aUCGCCCCCGgCGucgcuugcauGCGGGGCg- -3'
miRNA:   3'- -AGCGGGGGCgGCuuaag-----UGCCCCGac -5'
28117 3' -60.7 NC_005887.1 + 34446 0.72 0.146311
Target:  5'- cUCGCgCCCgGCCGccucuGAUaCGCGGGGCg- -3'
miRNA:   3'- -AGCG-GGGgCGGC-----UUAaGUGCCCCGac -5'
28117 3' -60.7 NC_005887.1 + 30422 0.73 0.114369
Target:  5'- uUCGCCCaCCaucagGCCGAcgUCgggGCGGGGCa- -3'
miRNA:   3'- -AGCGGG-GG-----CGGCUuaAG---UGCCCCGac -5'
28117 3' -60.7 NC_005887.1 + 1009 0.75 0.094158
Target:  5'- aCGCCUUCGCCGAAgcacuCGGGGCa- -3'
miRNA:   3'- aGCGGGGGCGGCUUaagu-GCCCCGac -5'
28117 3' -60.7 NC_005887.1 + 6535 1.08 0.00027
Target:  5'- aUCGCCCCCGCCGAAUUCACGGGGCUGu -3'
miRNA:   3'- -AGCGGGGGCGGCUUAAGUGCCCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.