Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 15221 | 0.66 | 0.382919 |
Target: 5'- uUCGCCaugCCGUCGAGcgccugCAUGGGGUc- -3' miRNA: 3'- -AGCGGg--GGCGGCUUaa----GUGCCCCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 40055 | 0.66 | 0.373378 |
Target: 5'- aCGCCCgauaCCGuuCCGAucgUCcggcgggGCGGGGCUGc -3' miRNA: 3'- aGCGGG----GGC--GGCUua-AG-------UGCCCCGAC- -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 35015 | 0.66 | 0.365693 |
Target: 5'- gCGCaCgCCCGCCGAGUUCGaagcCGGcgacGGCa- -3' miRNA: 3'- aGCG-G-GGGCGGCUUAAGU----GCC----CCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 25093 | 0.66 | 0.357283 |
Target: 5'- cCGCCgCCGUCGGAuUUCGCGaccGGUUGu -3' miRNA: 3'- aGCGGgGGCGGCUU-AAGUGCc--CCGAC- -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 17429 | 0.66 | 0.34901 |
Target: 5'- -aGCCCUCGCCGAA--CugGcGGUUGu -3' miRNA: 3'- agCGGGGGCGGCUUaaGugCcCCGAC- -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 39078 | 0.66 | 0.34901 |
Target: 5'- -aGCCgCCGUCGAcugCGCGGuGGCa- -3' miRNA: 3'- agCGGgGGCGGCUuaaGUGCC-CCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 14756 | 0.67 | 0.340874 |
Target: 5'- cCGCCCgCCGCgacgagccCGAucgUGCGGGGCa- -3' miRNA: 3'- aGCGGG-GGCG--------GCUuaaGUGCCCCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 27590 | 0.67 | 0.336059 |
Target: 5'- cCGCCCaugaccgcCCGCCGcguAUUCACgccaugggaguaccaGGGGCUc -3' miRNA: 3'- aGCGGG--------GGCGGCu--UAAGUG---------------CCCCGAc -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 4465 | 0.69 | 0.25338 |
Target: 5'- gCGCCUUCGCCGGcgcgcauugccuuGUUCAacGGGCUGu -3' miRNA: 3'- aGCGGGGGCGGCU-------------UAAGUgcCCCGAC- -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 18238 | 0.7 | 0.21228 |
Target: 5'- aUCGCCUCggccaCGCCGGGcaccgUCACGGGcgaGCUGa -3' miRNA: 3'- -AGCGGGG-----GCGGCUUa----AGUGCCC---CGAC- -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 5466 | 0.7 | 0.201487 |
Target: 5'- gCGCCgCCCGCCG-GUUCAcCGGucgcGCUGg -3' miRNA: 3'- aGCGG-GGGCGGCuUAAGU-GCCc---CGAC- -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 37759 | 0.72 | 0.151959 |
Target: 5'- aUCGCCCCCGgCGucgcuugcauGCGGGGCg- -3' miRNA: 3'- -AGCGGGGGCgGCuuaag-----UGCCCCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 34446 | 0.72 | 0.146311 |
Target: 5'- cUCGCgCCCgGCCGccucuGAUaCGCGGGGCg- -3' miRNA: 3'- -AGCG-GGGgCGGC-----UUAaGUGCCCCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 30422 | 0.73 | 0.114369 |
Target: 5'- uUCGCCCaCCaucagGCCGAcgUCgggGCGGGGCa- -3' miRNA: 3'- -AGCGGG-GG-----CGGCUuaAG---UGCCCCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 1009 | 0.75 | 0.094158 |
Target: 5'- aCGCCUUCGCCGAAgcacuCGGGGCa- -3' miRNA: 3'- aGCGGGGGCGGCUUaagu-GCCCCGac -5' |
|||||||
28117 | 3' | -60.7 | NC_005887.1 | + | 6535 | 1.08 | 0.00027 |
Target: 5'- aUCGCCCCCGCCGAAUUCACGGGGCUGu -3' miRNA: 3'- -AGCGGGGGCGGCUUAAGUGCCCCGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home