miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28117 5' -51.4 NC_005887.1 + 29952 0.66 0.798263
Target:  5'- -uCGACggUGUcGAGCGCCGcGAACAc -3'
miRNA:   3'- auGUUGa-GCAaCUCGCGGCuCUUGUu -5'
28117 5' -51.4 NC_005887.1 + 21670 0.66 0.798263
Target:  5'- gGCGugUCGcUGA-CGUCGGGGGCAGc -3'
miRNA:   3'- aUGUugAGCaACUcGCGGCUCUUGUU- -5'
28117 5' -51.4 NC_005887.1 + 19862 0.66 0.787842
Target:  5'- -uUAAUUCGUUG-GCGUCGAGuGGCGGa -3'
miRNA:   3'- auGUUGAGCAACuCGCGGCUC-UUGUU- -5'
28117 5' -51.4 NC_005887.1 + 26658 0.66 0.787842
Target:  5'- cUGCAGCUCGcgaacGGCGCCgucuacaagcagGAGGACGAc -3'
miRNA:   3'- -AUGUUGAGCaac--UCGCGG------------CUCUUGUU- -5'
28117 5' -51.4 NC_005887.1 + 25999 0.67 0.766459
Target:  5'- gUACAGCUucaCGggcGGCGUCGGGGGCGAg -3'
miRNA:   3'- -AUGUUGA---GCaacUCGCGGCUCUUGUU- -5'
28117 5' -51.4 NC_005887.1 + 40636 0.67 0.744445
Target:  5'- gUACuuGCUCGagc-GCGCCGAGAACu- -3'
miRNA:   3'- -AUGu-UGAGCaacuCGCGGCUCUUGuu -5'
28117 5' -51.4 NC_005887.1 + 34008 0.68 0.687383
Target:  5'- gACGuGCUCGccGAGCGCCGucGGCAGg -3'
miRNA:   3'- aUGU-UGAGCaaCUCGCGGCucUUGUU- -5'
28117 5' -51.4 NC_005887.1 + 27400 0.68 0.687383
Target:  5'- -gUAAUUCGUUucGAGCGCCGAaAGCGu -3'
miRNA:   3'- auGUUGAGCAA--CUCGCGGCUcUUGUu -5'
28117 5' -51.4 NC_005887.1 + 35563 0.71 0.524425
Target:  5'- gACAugUgCGgcGAGCGCCGGGcACAc -3'
miRNA:   3'- aUGUugA-GCaaCUCGCGGCUCuUGUu -5'
28117 5' -51.4 NC_005887.1 + 23271 0.71 0.490976
Target:  5'- cGCAGCUCGUggcGGuugccgcagcccGCGCCGaAGAACAAc -3'
miRNA:   3'- aUGUUGAGCAa--CU------------CGCGGC-UCUUGUU- -5'
28117 5' -51.4 NC_005887.1 + 6570 1.05 0.00276
Target:  5'- cUACAACUCGUUGAGCGCCGAGAACAAg -3'
miRNA:   3'- -AUGUUGAGCAACUCGCGGCUCUUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.