miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28118 5' -54.6 NC_005887.1 + 6005 0.66 0.638643
Target:  5'- -cGCA-GAUCgGUGcGUCGCUGAGUGAAg -3'
miRNA:   3'- caUGUaCUAG-UAC-CGGCGGCUCGCUU- -5'
28118 5' -54.6 NC_005887.1 + 19010 0.66 0.627174
Target:  5'- cGUGCGUuAU--UGGCCGCCGAcggccgcuGCGAGa -3'
miRNA:   3'- -CAUGUAcUAguACCGGCGGCU--------CGCUU- -5'
28118 5' -54.6 NC_005887.1 + 36003 0.67 0.57011
Target:  5'- cUGCGUGAUCAucgccgugUGGCCggacggccgcGCCGAGauCGAAg -3'
miRNA:   3'- cAUGUACUAGU--------ACCGG----------CGGCUC--GCUU- -5'
28118 5' -54.6 NC_005887.1 + 32834 0.67 0.536451
Target:  5'- -gACGUGA---UGGCCGCCGuGCa-- -3'
miRNA:   3'- caUGUACUaguACCGGCGGCuCGcuu -5'
28118 5' -54.6 NC_005887.1 + 28745 0.68 0.525381
Target:  5'- -gGCGUGAUCGcgGGuuGUCGucuGGCGAAu -3'
miRNA:   3'- caUGUACUAGUa-CCggCGGC---UCGCUU- -5'
28118 5' -54.6 NC_005887.1 + 12575 0.68 0.502427
Target:  5'- -gGCAUGcgCAUGGuguCCGCCGAcccggccGCGAc -3'
miRNA:   3'- caUGUACuaGUACC---GGCGGCU-------CGCUu -5'
28118 5' -54.6 NC_005887.1 + 9969 0.7 0.410734
Target:  5'- -aACAUGAUCGU-GCCGCCGAccuGCa-- -3'
miRNA:   3'- caUGUACUAGUAcCGGCGGCU---CGcuu -5'
28118 5' -54.6 NC_005887.1 + 35409 0.7 0.39159
Target:  5'- -gGCGUGAagcUCGUGGCCGgCCGccGCGGc -3'
miRNA:   3'- caUGUACU---AGUACCGGC-GGCu-CGCUu -5'
28118 5' -54.6 NC_005887.1 + 299 0.7 0.373037
Target:  5'- -gGCGUGAUCAgcgaGGCCGCgGuGCGc- -3'
miRNA:   3'- caUGUACUAGUa---CCGGCGgCuCGCuu -5'
28118 5' -54.6 NC_005887.1 + 10177 0.73 0.240273
Target:  5'- cGUGCAgccGAUCAgcUGGCCGUCGGcGCGGg -3'
miRNA:   3'- -CAUGUa--CUAGU--ACCGGCGGCU-CGCUu -5'
28118 5' -54.6 NC_005887.1 + 25527 0.75 0.198217
Target:  5'- -gGCAUaAUCGUcGCCGCCGAGCGGu -3'
miRNA:   3'- caUGUAcUAGUAcCGGCGGCUCGCUu -5'
28118 5' -54.6 NC_005887.1 + 6899 1.06 0.001102
Target:  5'- aGUACAUGAUCAUGGCCGCCGAGCGAAu -3'
miRNA:   3'- -CAUGUACUAGUACCGGCGGCUCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.