miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 3' -57.2 NC_001491.2 + 40200 0.68 0.745705
Target:  5'- -uGUuuGGCGGCGGCUAUCGCGGCc--- -3'
miRNA:   3'- guCG--UCGUUGCUGGUGGCGCCGauga -5'
2812 3' -57.2 NC_001491.2 + 41389 0.68 0.735959
Target:  5'- aGGUGGCcuUGuCCAgCGCGGCUGCc -3'
miRNA:   3'- gUCGUCGuuGCuGGUgGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 6820 0.68 0.716206
Target:  5'- gCAGCuGCAgAUGAUUACCGgGGCgugGCUu -3'
miRNA:   3'- -GUCGuCGU-UGCUGGUGGCgCCGa--UGA- -5'
2812 3' -57.2 NC_001491.2 + 127555 0.69 0.696165
Target:  5'- aCAGCAGCuccucggccgAugGGCgCAUCGCGGCa--- -3'
miRNA:   3'- -GUCGUCG----------UugCUG-GUGGCGCCGauga -5'
2812 3' -57.2 NC_001491.2 + 116182 0.69 0.686059
Target:  5'- cCGGCGGCGAgcccuucucCGGCU-CCGCGGCcGCg -3'
miRNA:   3'- -GUCGUCGUU---------GCUGGuGGCGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 42902 0.69 0.686059
Target:  5'- cUAGCGGCAGCGAucuCCACUGCGuugACg -3'
miRNA:   3'- -GUCGUCGUUGCU---GGUGGCGCcgaUGa -5'
2812 3' -57.2 NC_001491.2 + 50168 0.69 0.674892
Target:  5'- aUAGCAcGCAuuCGGCgCAgguucuuCCGCGGCUGCg -3'
miRNA:   3'- -GUCGU-CGUu-GCUG-GU-------GGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 45122 0.69 0.665723
Target:  5'- -cGCGGCGGgGGCCGCCGCagauuuggccggGGCcGCg -3'
miRNA:   3'- guCGUCGUUgCUGGUGGCG------------CCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 45188 0.69 0.665723
Target:  5'- -cGCGGCGGgGGCCGCCGCagauuuggccggGGCcGCg -3'
miRNA:   3'- guCGUCGUUgCUGGUGGCG------------CCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 45254 0.69 0.665723
Target:  5'- -cGCGGCGGgGGCCGCCGCagauuuggccggGGCcGCg -3'
miRNA:   3'- guCGUCGUUgCUGGUGGCG------------CCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 146507 0.69 0.655509
Target:  5'- gAGCGGCcGCGGCCGCgGCaGCcuUGCg -3'
miRNA:   3'- gUCGUCGuUGCUGGUGgCGcCG--AUGa -5'
2812 3' -57.2 NC_001491.2 + 138116 0.69 0.655509
Target:  5'- uGGCGGCcccccCgGCCGCGGCUGCg -3'
miRNA:   3'- gUCGUCGuugcuGgUGGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 123433 0.69 0.655509
Target:  5'- cCAGUAGCGcucuGCGuCCGCCGgCGGCg--- -3'
miRNA:   3'- -GUCGUCGU----UGCuGGUGGC-GCCGauga -5'
2812 3' -57.2 NC_001491.2 + 125600 0.7 0.645277
Target:  5'- gGGCGGCcGCuGCCGCgGCGGCgGCc -3'
miRNA:   3'- gUCGUCGuUGcUGGUGgCGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 86709 0.7 0.63401
Target:  5'- aCAGCugucugaGGCGGCGGCCAUCauGCGGC-ACg -3'
miRNA:   3'- -GUCG-------UCGUUGCUGGUGG--CGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 4310 0.7 0.61455
Target:  5'- aCAGCAGCGACuGCaaGCUGgGGCUAUUg -3'
miRNA:   3'- -GUCGUCGUUGcUGg-UGGCgCCGAUGA- -5'
2812 3' -57.2 NC_001491.2 + 144874 0.71 0.580895
Target:  5'- gGGCGGCAGCcgccgggguaggagGACCGCCGCuGCcgGCg -3'
miRNA:   3'- gUCGUCGUUG--------------CUGGUGGCGcCGa-UGa -5'
2812 3' -57.2 NC_001491.2 + 116058 0.71 0.553644
Target:  5'- cCAGCacucccagAGCGGCGGaggCGCCGgGGCUACg -3'
miRNA:   3'- -GUCG--------UCGUUGCUg--GUGGCgCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 146391 0.72 0.5043
Target:  5'- gCGGCAGCGGCGGCCuggGCCGgguagcCGGCcACg -3'
miRNA:   3'- -GUCGUCGUUGCUGG---UGGC------GCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 51272 0.73 0.475617
Target:  5'- aGGCGGCAACGcCgGCCuggucccccuggGCGGCUGCc -3'
miRNA:   3'- gUCGUCGUUGCuGgUGG------------CGCCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.