Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2812 | 5' | -57.9 | NC_001491.2 | + | 97463 | 0.68 | 0.71533 |
Target: 5'- aGCuucCCACgGCGcGCUuaAgCGCCGCCGUu -3' miRNA: 3'- -CGuu-GGUGgCGC-CGA--UgGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 141542 | 0.68 | 0.713373 |
Target: 5'- uGCGccCCGCCGUGGCgccccgaugugaACCGCC-UCGCg -3' miRNA: 3'- -CGUu-GGUGGCGCCGa-----------UGGUGGuGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 49699 | 0.68 | 0.712394 |
Target: 5'- cGCGGCCACgGUagauuguuguuuggGGCcaaacACC-CCACCGCc -3' miRNA: 3'- -CGUUGGUGgCG--------------CCGa----UGGuGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 85685 | 0.68 | 0.734728 |
Target: 5'- cCGGCCACgGCGGCguggcCCACguCCaGCc -3' miRNA: 3'- cGUUGGUGgCGCCGau---GGUGguGG-CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 106872 | 0.68 | 0.744303 |
Target: 5'- -aGACCugCGCgugacgcuGGCUAaauUCACCAUUGCg -3' miRNA: 3'- cgUUGGugGCG--------CCGAU---GGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 97072 | 0.68 | 0.744303 |
Target: 5'- uGUGGCCACgCGCuaggGGCUAgguCUGCCAgCGCg -3' miRNA: 3'- -CGUUGGUG-GCG----CCGAU---GGUGGUgGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 147395 | 0.68 | 0.76688 |
Target: 5'- cCGGCCuggGCCGcCGGCUccaggggcucggagcGCCGCuUGCCGCu -3' miRNA: 3'- cGUUGG---UGGC-GCCGA---------------UGGUG-GUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 48944 | 0.68 | 0.76316 |
Target: 5'- -gAACgCACC-CGGCUGCCAgCCuCCGg -3' miRNA: 3'- cgUUG-GUGGcGCCGAUGGU-GGuGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 31903 | 0.68 | 0.762228 |
Target: 5'- aGCAGUCggugugaGCCGCGGUgcCCGCCuuCGCg -3' miRNA: 3'- -CGUUGG-------UGGCGCCGauGGUGGugGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 1790 | 0.68 | 0.753784 |
Target: 5'- cGCcguCCAcgcCCGCGGCcGCUcuGCC-CCGCg -3' miRNA: 3'- -CGuu-GGU---GGCGCCGaUGG--UGGuGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 42555 | 0.68 | 0.753784 |
Target: 5'- aGC-ACUGCCGCGuaUAUCuCgGCCGCa -3' miRNA: 3'- -CGuUGGUGGCGCcgAUGGuGgUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 41385 | 0.68 | 0.744303 |
Target: 5'- gGCcuuguCCAgCGCGGCUGCCACacuUUGUg -3' miRNA: 3'- -CGuu---GGUgGCGCCGAUGGUGgu-GGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 92785 | 0.68 | 0.744303 |
Target: 5'- aGCAACCcUCGCGGU--CCACaauCACCGg -3' miRNA: 3'- -CGUUGGuGGCGCCGauGGUG---GUGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 116180 | 0.68 | 0.744303 |
Target: 5'- gGCGGCgaGCCcuucucCGGCU-CCGCgGCCGCg -3' miRNA: 3'- -CGUUGg-UGGc-----GCCGAuGGUGgUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 123086 | 0.68 | 0.744303 |
Target: 5'- uGCcuCCGCCGacaCGGC-GCgCACgACCGCg -3' miRNA: 3'- -CGuuGGUGGC---GCCGaUG-GUGgUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 138115 | 0.69 | 0.685739 |
Target: 5'- gGCGGCCcccccgGCCGCGGCUGCgGCgAagGUg -3' miRNA: 3'- -CGUUGG------UGGCGCCGAUGgUGgUggCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 114446 | 0.69 | 0.685739 |
Target: 5'- uGCccAUCACCGaGGCU-CC-CCGCCGCc -3' miRNA: 3'- -CGu-UGGUGGCgCCGAuGGuGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 91814 | 0.69 | 0.685739 |
Target: 5'- cGC-ACCACUGCGGgUGgUACUGCgGCc -3' miRNA: 3'- -CGuUGGUGGCGCCgAUgGUGGUGgCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 129509 | 0.69 | 0.705523 |
Target: 5'- aGCGGCCGuuGUGGgaGCCGCgGUCGUu -3' miRNA: 3'- -CGUUGGUggCGCCgaUGGUGgUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 141017 | 0.69 | 0.685739 |
Target: 5'- aCAACCAccacccuacaacCCGCGcuagcGCUGCCAaaaagCGCCGCa -3' miRNA: 3'- cGUUGGU------------GGCGC-----CGAUGGUg----GUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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