Results 81 - 100 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2812 | 5' | -57.9 | NC_001491.2 | + | 106389 | 0.7 | 0.62562 |
Target: 5'- -gGGCCGCCGCcaaGCuUGCCGCCGCUa- -3' miRNA: 3'- cgUUGGUGGCGc--CG-AUGGUGGUGGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 85149 | 0.7 | 0.62562 |
Target: 5'- uCGGCgACCGCGGCUucuaugugcgauGCCGCaguaACgGCg -3' miRNA: 3'- cGUUGgUGGCGCCGA------------UGGUGg---UGgCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 146364 | 0.7 | 0.62562 |
Target: 5'- cCGGCCACgGCGGCgagugaguccgGCCuCC-CCGCc -3' miRNA: 3'- cGUUGGUGgCGCCGa----------UGGuGGuGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 35379 | 0.7 | 0.635673 |
Target: 5'- uGCAAaaagggggaCACCGaGGCUAUUAUCGCCGUu -3' miRNA: 3'- -CGUUg--------GUGGCgCCGAUGGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 145017 | 0.7 | 0.635673 |
Target: 5'- gGCGACCgggucgGCCGCGucc-CCACCGCCGg -3' miRNA: 3'- -CGUUGG------UGGCGCcgauGGUGGUGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 83856 | 0.71 | 0.544975 |
Target: 5'- aGgAACCGgUGUGGCUguagucgGCCGCUAUCGCu -3' miRNA: 3'- -CgUUGGUgGCGCCGA-------UGGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 67903 | 0.71 | 0.555777 |
Target: 5'- --cAUCACCGC-GCUGCUGCUGCUGCg -3' miRNA: 3'- cguUGGUGGCGcCGAUGGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 121159 | 0.71 | 0.555777 |
Target: 5'- cCGACCACCGaccaccgACCACCACCGa -3' miRNA: 3'- cGUUGGUGGCgccga--UGGUGGUGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 59912 | 0.71 | 0.585529 |
Target: 5'- aCAGCU-CCGgGGgUACCACUauGCCGCu -3' miRNA: 3'- cGUUGGuGGCgCCgAUGGUGG--UGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 98959 | 0.71 | 0.585529 |
Target: 5'- cGCA--UACCGCGGCUACCAgCGguaGCa -3' miRNA: 3'- -CGUugGUGGCGCCGAUGGUgGUgg-CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 125106 | 0.72 | 0.497782 |
Target: 5'- cGCAGCCgcgGCCGgGGggGCCGCCAacuCCaGCg -3' miRNA: 3'- -CGUUGG---UGGCgCCgaUGGUGGU---GG-CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 140197 | 0.72 | 0.526481 |
Target: 5'- aGCAcggaCACCGCGGCgcacgcggucUCGCUGCCGCg -3' miRNA: 3'- -CGUug--GUGGCGCCGau--------GGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 115609 | 0.72 | 0.536186 |
Target: 5'- cGCGGCCcagcgaCGCGGCUugCGCgGCCu- -3' miRNA: 3'- -CGUUGGug----GCGCCGAugGUGgUGGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 4903 | 0.73 | 0.469807 |
Target: 5'- uGCGACCACCaGCGGCUGUCugaCGUCGCg -3' miRNA: 3'- -CGUUGGUGG-CGCCGAUGGug-GUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 80251 | 0.73 | 0.45975 |
Target: 5'- aGCAGuuACCGCGcgagaauGCaGgCACCACCGCa -3' miRNA: 3'- -CGUUggUGGCGC-------CGaUgGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 118341 | 0.73 | 0.442655 |
Target: 5'- --uACC-CCgGCGGCUGCCGCCcaGCCGg -3' miRNA: 3'- cguUGGuGG-CGCCGAUGGUGG--UGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 123136 | 0.73 | 0.433803 |
Target: 5'- cGCGGCCAggccuCCGCgGGCggcCCGgCGCCGCu -3' miRNA: 3'- -CGUUGGU-----GGCG-CCGau-GGUgGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 116595 | 0.74 | 0.425054 |
Target: 5'- uGC-GCCuCCGCGGCgggGCguCCGCCGUc -3' miRNA: 3'- -CGuUGGuGGCGCCGa--UGguGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 37204 | 0.74 | 0.425054 |
Target: 5'- cGCGACauCACCGUGGCgauaCACCGCCa- -3' miRNA: 3'- -CGUUG--GUGGCGCCGaug-GUGGUGGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 123290 | 0.74 | 0.425054 |
Target: 5'- uGCGGCCGCUGacuCGGCgugggucuCCACCggcGCCGCg -3' miRNA: 3'- -CGUUGGUGGC---GCCGau------GGUGG---UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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