miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 117864 0.77 0.280585
Target:  5'- cCGGCCGCUGgGGCcGCCACCccgaagagcuGCCGCu -3'
miRNA:   3'- cGUUGGUGGCgCCGaUGGUGG----------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116045 0.77 0.280585
Target:  5'- aGCGGCggaggCGCCGgGGCUacgACCGCCACCuGCu -3'
miRNA:   3'- -CGUUG-----GUGGCgCCGA---UGGUGGUGG-CG- -5'
2812 5' -57.9 NC_001491.2 + 118539 0.77 0.285146
Target:  5'- cGCAGCCAgCGCGGCcgaagagggguucacCCAgcCCGCCGCg -3'
miRNA:   3'- -CGUUGGUgGCGCCGau-------------GGU--GGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 45264 0.76 0.303286
Target:  5'- -uGGCCgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 45132 0.76 0.303286
Target:  5'- -uGGCCgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 73790 0.76 0.300543
Target:  5'- aUAACCAUCGuUGGUUA-CACCACCGCa -3'
miRNA:   3'- cGUUGGUGGC-GCCGAUgGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 45198 0.76 0.303286
Target:  5'- -uGGCCgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 146506 0.75 0.359044
Target:  5'- aGCGGCCgcgGCCGCGGCaGCCuugcgucgggGCCcgaggGCCGCg -3'
miRNA:   3'- -CGUUGG---UGGCGCCGaUGG----------UGG-----UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 125176 0.75 0.37486
Target:  5'- uCuuCCGCUGCGcGCUcGCuCGCCGCCGCa -3'
miRNA:   3'- cGuuGGUGGCGC-CGA-UG-GUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 65564 0.75 0.37486
Target:  5'- cCAACCGCagcaCGCGGUUuCCGCCAUCGUc -3'
miRNA:   3'- cGUUGGUG----GCGCCGAuGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 125607 0.75 0.3437
Target:  5'- --cGCC-CCGgGGCgGCCGCUGCCGCg -3'
miRNA:   3'- cguUGGuGGCgCCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 106049 0.75 0.359044
Target:  5'- gGCGGCaGCCGCGGCgagGCCaACCAC-GCu -3'
miRNA:   3'- -CGUUGgUGGCGCCGa--UGG-UGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 146867 0.75 0.373258
Target:  5'- uGUAGCgCACCaGCGGCgccacgguccggGCCACCACCa- -3'
miRNA:   3'- -CGUUG-GUGG-CGCCGa-----------UGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 146261 0.75 0.359044
Target:  5'- uGCGAUCguaGCgGCGGCUcaugGCCACCaggcgGCCGCg -3'
miRNA:   3'- -CGUUGG---UGgCGCCGA----UGGUGG-----UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116595 0.74 0.425054
Target:  5'- uGC-GCCuCCGCGGCgggGCguCCGCCGUc -3'
miRNA:   3'- -CGuUGGuGGCGCCGa--UGguGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 37204 0.74 0.425054
Target:  5'- cGCGACauCACCGUGGCgauaCACCGCCa- -3'
miRNA:   3'- -CGUUG--GUGGCGCCGaug-GUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 123290 0.74 0.425054
Target:  5'- uGCGGCCGCUGacuCGGCgugggucuCCACCggcGCCGCg -3'
miRNA:   3'- -CGUUGGUGGC---GCCGau------GGUGG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 118341 0.73 0.442655
Target:  5'- --uACC-CCgGCGGCUGCCGCCcaGCCGg -3'
miRNA:   3'- cguUGGuGG-CGCCGAUGGUGG--UGGCg -5'
2812 5' -57.9 NC_001491.2 + 4903 0.73 0.469807
Target:  5'- uGCGACCACCaGCGGCUGUCugaCGUCGCg -3'
miRNA:   3'- -CGUUGGUGG-CGCCGAUGGug-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 80251 0.73 0.45975
Target:  5'- aGCAGuuACCGCGcgagaauGCaGgCACCACCGCa -3'
miRNA:   3'- -CGUUggUGGCGC-------CGaUgGUGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.