Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2812 | 5' | -57.9 | NC_001491.2 | + | 145017 | 0.7 | 0.635673 |
Target: 5'- gGCGACCgggucgGCCGCGucc-CCACCGCCGg -3' miRNA: 3'- -CGUUGG------UGGCGCcgauGGUGGUGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 51268 | 0.69 | 0.655762 |
Target: 5'- gGCAacGCCgGCCuggucccccuggGCGGCUGCCGCCAgCa- -3' miRNA: 3'- -CGU--UGG-UGG------------CGCCGAUGGUGGUgGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 49491 | 0.69 | 0.655762 |
Target: 5'- cCGGCCAUgGCcGUUGCCGCCgggGCCGUc -3' miRNA: 3'- cGUUGGUGgCGcCGAUGGUGG---UGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 97587 | 0.69 | 0.662779 |
Target: 5'- aCGAUCGCCGCccgcggagagacguGGUcGCCACCGCCu- -3' miRNA: 3'- cGUUGGUGGCG--------------CCGaUGGUGGUGGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 51986 | 0.69 | 0.665783 |
Target: 5'- -aAACC-CCGUGGUaACCAagACCGCa -3' miRNA: 3'- cgUUGGuGGCGCCGaUGGUggUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 13037 | 0.69 | 0.665783 |
Target: 5'- gGCGGCCAUUGgaGGUcgauaguuUACCACCGCCa- -3' miRNA: 3'- -CGUUGGUGGCg-CCG--------AUGGUGGUGGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 65746 | 0.69 | 0.665783 |
Target: 5'- cGCAGa-GCCG-GGCgcccguccACCACCAUCGCg -3' miRNA: 3'- -CGUUggUGGCgCCGa-------UGGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 114564 | 0.69 | 0.675778 |
Target: 5'- uGCGGCCGgCGCGGC-GCUGggGCCGUg -3' miRNA: 3'- -CGUUGGUgGCGCCGaUGGUggUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 129890 | 0.69 | 0.675778 |
Target: 5'- gGUAGCCGCgGUGGUgguaGCCGCgguggugguaGCCGCg -3' miRNA: 3'- -CGUUGGUGgCGCCGa---UGGUGg---------UGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 65455 | 0.69 | 0.675778 |
Target: 5'- gGCAguGCCaaggucguaGCCGCuuCUACCGCC-CCGCa -3' miRNA: 3'- -CGU--UGG---------UGGCGccGAUGGUGGuGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 129845 | 0.69 | 0.675778 |
Target: 5'- gGUAGCCGCgGUGGUgguaGCCGCgguggugguaGCCGCg -3' miRNA: 3'- -CGUUGGUGgCGCCGa---UGGUGg---------UGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 29635 | 0.69 | 0.685739 |
Target: 5'- --uACC-CCGgGGUUACCcucGCCaACCGCa -3' miRNA: 3'- cguUGGuGGCgCCGAUGG---UGG-UGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 141017 | 0.69 | 0.685739 |
Target: 5'- aCAACCAccacccuacaacCCGCGcuagcGCUGCCAaaaagCGCCGCa -3' miRNA: 3'- cGUUGGU------------GGCGC-----CGAUGGUg----GUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 91814 | 0.69 | 0.685739 |
Target: 5'- cGC-ACCACUGCGGgUGgUACUGCgGCc -3' miRNA: 3'- -CGuUGGUGGCGCCgAUgGUGGUGgCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 114446 | 0.69 | 0.685739 |
Target: 5'- uGCccAUCACCGaGGCU-CC-CCGCCGCc -3' miRNA: 3'- -CGu-UGGUGGCgCCGAuGGuGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 138115 | 0.69 | 0.685739 |
Target: 5'- gGCGGCCcccccgGCCGCGGCUGCgGCgAagGUg -3' miRNA: 3'- -CGUUGG------UGGCGCCGAUGgUGgUggCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 147914 | 0.69 | 0.685739 |
Target: 5'- -gAGCCGCCGgGGCgggagGCCGggaguCCGCCcaGCa -3' miRNA: 3'- cgUUGGUGGCgCCGa----UGGU-----GGUGG--CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 43057 | 0.69 | 0.705523 |
Target: 5'- gGCGgagGCUAUCuuuGCGGCcGCCGCCcguCCGCu -3' miRNA: 3'- -CGU---UGGUGG---CGCCGaUGGUGGu--GGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 129509 | 0.69 | 0.705523 |
Target: 5'- aGCGGCCGuuGUGGgaGCCGCgGUCGUu -3' miRNA: 3'- -CGUUGGUggCGCCgaUGGUGgUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 49699 | 0.68 | 0.712394 |
Target: 5'- cGCGGCCACgGUagauuguuguuuggGGCcaaacACC-CCACCGCc -3' miRNA: 3'- -CGUUGGUGgCG--------------CCGa----UGGuGGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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