miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 138115 0.69 0.685739
Target:  5'- gGCGGCCcccccgGCCGCGGCUGCgGCgAagGUg -3'
miRNA:   3'- -CGUUGG------UGGCGCCGAUGgUGgUggCG- -5'
2812 5' -57.9 NC_001491.2 + 114446 0.69 0.685739
Target:  5'- uGCccAUCACCGaGGCU-CC-CCGCCGCc -3'
miRNA:   3'- -CGu-UGGUGGCgCCGAuGGuGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 91814 0.69 0.685739
Target:  5'- cGC-ACCACUGCGGgUGgUACUGCgGCc -3'
miRNA:   3'- -CGuUGGUGGCGCCgAUgGUGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 65455 0.69 0.675778
Target:  5'- gGCAguGCCaaggucguaGCCGCuuCUACCGCC-CCGCa -3'
miRNA:   3'- -CGU--UGG---------UGGCGccGAUGGUGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 129890 0.69 0.675778
Target:  5'- gGUAGCCGCgGUGGUgguaGCCGCgguggugguaGCCGCg -3'
miRNA:   3'- -CGUUGGUGgCGCCGa---UGGUGg---------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 129845 0.69 0.675778
Target:  5'- gGUAGCCGCgGUGGUgguaGCCGCgguggugguaGCCGCg -3'
miRNA:   3'- -CGUUGGUGgCGCCGa---UGGUGg---------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 114564 0.69 0.675778
Target:  5'- uGCGGCCGgCGCGGC-GCUGggGCCGUg -3'
miRNA:   3'- -CGUUGGUgGCGCCGaUGGUggUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 51986 0.69 0.665783
Target:  5'- -aAACC-CCGUGGUaACCAagACCGCa -3'
miRNA:   3'- cgUUGGuGGCGCCGaUGGUggUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 13037 0.69 0.665783
Target:  5'- gGCGGCCAUUGgaGGUcgauaguuUACCACCGCCa- -3'
miRNA:   3'- -CGUUGGUGGCg-CCG--------AUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 65746 0.69 0.665783
Target:  5'- cGCAGa-GCCG-GGCgcccguccACCACCAUCGCg -3'
miRNA:   3'- -CGUUggUGGCgCCGa-------UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 97587 0.69 0.662779
Target:  5'- aCGAUCGCCGCccgcggagagacguGGUcGCCACCGCCu- -3'
miRNA:   3'- cGUUGGUGGCG--------------CCGaUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 49491 0.69 0.655762
Target:  5'- cCGGCCAUgGCcGUUGCCGCCgggGCCGUc -3'
miRNA:   3'- cGUUGGUGgCGcCGAUGGUGG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 51268 0.69 0.655762
Target:  5'- gGCAacGCCgGCCuggucccccuggGCGGCUGCCGCCAgCa- -3'
miRNA:   3'- -CGU--UGG-UGG------------CGCCGAUGGUGGUgGcg -5'
2812 5' -57.9 NC_001491.2 + 145017 0.7 0.635673
Target:  5'- gGCGACCgggucgGCCGCGucc-CCACCGCCGg -3'
miRNA:   3'- -CGUUGG------UGGCGCcgauGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 35379 0.7 0.635673
Target:  5'- uGCAAaaagggggaCACCGaGGCUAUUAUCGCCGUu -3'
miRNA:   3'- -CGUUg--------GUGGCgCCGAUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 106389 0.7 0.62562
Target:  5'- -gGGCCGCCGCcaaGCuUGCCGCCGCUa- -3'
miRNA:   3'- cgUUGGUGGCGc--CG-AUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 85149 0.7 0.62562
Target:  5'- uCGGCgACCGCGGCUucuaugugcgauGCCGCaguaACgGCg -3'
miRNA:   3'- cGUUGgUGGCGCCGA------------UGGUGg---UGgCG- -5'
2812 5' -57.9 NC_001491.2 + 146364 0.7 0.62562
Target:  5'- cCGGCCACgGCGGCgagugaguccgGCCuCC-CCGCc -3'
miRNA:   3'- cGUUGGUGgCGCCGa----------UGGuGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 114970 0.7 0.615572
Target:  5'- gGCcGCCcugacuCCGCGGgUcGCCugCGCCGUg -3'
miRNA:   3'- -CGuUGGu-----GGCGCCgA-UGGugGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 49292 0.7 0.615572
Target:  5'- gGCAACCACaGUGGCgACUGCaCAUgGCg -3'
miRNA:   3'- -CGUUGGUGgCGCCGaUGGUG-GUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.