miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 49292 0.7 0.615572
Target:  5'- gGCAACCACaGUGGCgACUGCaCAUgGCg -3'
miRNA:   3'- -CGUUGGUGgCGCCGaUGGUG-GUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 123023 0.7 0.605537
Target:  5'- cGCGugCGCCGCGGUguccgUGCUggucggguauaGCCcguCCGCg -3'
miRNA:   3'- -CGUugGUGGCGCCG-----AUGG-----------UGGu--GGCG- -5'
2812 5' -57.9 NC_001491.2 + 98923 0.7 0.605537
Target:  5'- aGCucGCCuuCGCGGCUcuGCCGgCC-CCGCu -3'
miRNA:   3'- -CGu-UGGugGCGCCGA--UGGU-GGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 69307 0.7 0.605537
Target:  5'- cCAGCCGUCaGCGGCaGCCGCCGUCGUg -3'
miRNA:   3'- cGUUGGUGG-CGCCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 115488 0.7 0.59552
Target:  5'- gGCcACCAUCGCGGC--CCGCUGCaGCg -3'
miRNA:   3'- -CGuUGGUGGCGCCGauGGUGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 98959 0.71 0.585529
Target:  5'- cGCA--UACCGCGGCUACCAgCGguaGCa -3'
miRNA:   3'- -CGUugGUGGCGCCGAUGGUgGUgg-CG- -5'
2812 5' -57.9 NC_001491.2 + 59912 0.71 0.585529
Target:  5'- aCAGCU-CCGgGGgUACCACUauGCCGCu -3'
miRNA:   3'- cGUUGGuGGCgCCgAUGGUGG--UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 121159 0.71 0.555777
Target:  5'- cCGACCACCGaccaccgACCACCACCGa -3'
miRNA:   3'- cGUUGGUGGCgccga--UGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 67903 0.71 0.555777
Target:  5'- --cAUCACCGC-GCUGCUGCUGCUGCg -3'
miRNA:   3'- cguUGGUGGCGcCGAUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 83856 0.71 0.544975
Target:  5'- aGgAACCGgUGUGGCUguagucgGCCGCUAUCGCu -3'
miRNA:   3'- -CgUUGGUgGCGCCGA-------UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 115609 0.72 0.536186
Target:  5'- cGCGGCCcagcgaCGCGGCUugCGCgGCCu- -3'
miRNA:   3'- -CGUUGGug----GCGCCGAugGUGgUGGcg -5'
2812 5' -57.9 NC_001491.2 + 140197 0.72 0.526481
Target:  5'- aGCAcggaCACCGCGGCgcacgcggucUCGCUGCCGCg -3'
miRNA:   3'- -CGUug--GUGGCGCCGau--------GGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 125106 0.72 0.497782
Target:  5'- cGCAGCCgcgGCCGgGGggGCCGCCAacuCCaGCg -3'
miRNA:   3'- -CGUUGG---UGGCgCCgaUGGUGGU---GG-CG- -5'
2812 5' -57.9 NC_001491.2 + 4903 0.73 0.469807
Target:  5'- uGCGACCACCaGCGGCUGUCugaCGUCGCg -3'
miRNA:   3'- -CGUUGGUGG-CGCCGAUGGug-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 80251 0.73 0.45975
Target:  5'- aGCAGuuACCGCGcgagaauGCaGgCACCACCGCa -3'
miRNA:   3'- -CGUUggUGGCGC-------CGaUgGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 118341 0.73 0.442655
Target:  5'- --uACC-CCgGCGGCUGCCGCCcaGCCGg -3'
miRNA:   3'- cguUGGuGG-CGCCGAUGGUGG--UGGCg -5'
2812 5' -57.9 NC_001491.2 + 123136 0.73 0.433803
Target:  5'- cGCGGCCAggccuCCGCgGGCggcCCGgCGCCGCu -3'
miRNA:   3'- -CGUUGGU-----GGCG-CCGau-GGUgGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116595 0.74 0.425054
Target:  5'- uGC-GCCuCCGCGGCgggGCguCCGCCGUc -3'
miRNA:   3'- -CGuUGGuGGCGCCGa--UGguGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 37204 0.74 0.425054
Target:  5'- cGCGACauCACCGUGGCgauaCACCGCCa- -3'
miRNA:   3'- -CGUUG--GUGGCGCCGaug-GUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 123290 0.74 0.425054
Target:  5'- uGCGGCCGCUGacuCGGCgugggucuCCACCggcGCCGCg -3'
miRNA:   3'- -CGUUGGUGGC---GCCGau------GGUGG---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.