miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 67903 0.71 0.555777
Target:  5'- --cAUCACCGC-GCUGCUGCUGCUGCg -3'
miRNA:   3'- cguUGGUGGCGcCGAUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 69307 0.7 0.605537
Target:  5'- cCAGCCGUCaGCGGCaGCCGCCGUCGUg -3'
miRNA:   3'- cGUUGGUGG-CGCCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 73790 0.76 0.300543
Target:  5'- aUAACCAUCGuUGGUUA-CACCACCGCa -3'
miRNA:   3'- cGUUGGUGGC-GCCGAUgGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 73995 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74027 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74059 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74091 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74123 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74155 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74187 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74219 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74251 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 80251 0.73 0.45975
Target:  5'- aGCAGuuACCGCGcgagaauGCaGgCACCACCGCa -3'
miRNA:   3'- -CGUUggUGGCGC-------CGaUgGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 80519 0.67 0.816767
Target:  5'- cGCGuCCGgCGCGGCgguUGCCAgCACgGg -3'
miRNA:   3'- -CGUuGGUgGCGCCG---AUGGUgGUGgCg -5'
2812 5' -57.9 NC_001491.2 + 81240 0.67 0.816767
Target:  5'- gGCGAUU-CC-CGGUguugACCACgCGCCGCa -3'
miRNA:   3'- -CGUUGGuGGcGCCGa---UGGUG-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 81320 0.66 0.825182
Target:  5'- gGCGGCCugGCCGUgGGCaacgcCCGCCGgCGUg -3'
miRNA:   3'- -CGUUGG--UGGCG-CCGau---GGUGGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 82630 0.7 0.615572
Target:  5'- -gAGCCugcACCGCGcGC-GCUACCAgCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGC-CGaUGGUGGU-GGCG- -5'
2812 5' -57.9 NC_001491.2 + 83663 0.68 0.725067
Target:  5'- aGUAGCCAagaCGCuGCagUCGCCAUCGCa -3'
miRNA:   3'- -CGUUGGUg--GCGcCGauGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 83856 0.71 0.544975
Target:  5'- aGgAACCGgUGUGGCUguagucgGCCGCUAUCGCu -3'
miRNA:   3'- -CgUUGGUgGCGCCGA-------UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 84943 0.66 0.857077
Target:  5'- cGCAACCAgaguaaacgcguCaaaGCGGCcAUCGgCAUCGCa -3'
miRNA:   3'- -CGUUGGU------------Gg--CGCCGaUGGUgGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.