miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 85149 0.7 0.62562
Target:  5'- uCGGCgACCGCGGCUucuaugugcgauGCCGCaguaACgGCg -3'
miRNA:   3'- cGUUGgUGGCGCCGA------------UGGUGg---UGgCG- -5'
2812 5' -57.9 NC_001491.2 + 85685 0.68 0.734728
Target:  5'- cCGGCCACgGCGGCguggcCCACguCCaGCc -3'
miRNA:   3'- cGUUGGUGgCGCCGau---GGUGguGG-CG- -5'
2812 5' -57.9 NC_001491.2 + 91814 0.69 0.685739
Target:  5'- cGC-ACCACUGCGGgUGgUACUGCgGCc -3'
miRNA:   3'- -CGuUGGUGGCGCCgAUgGUGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 92785 0.68 0.744303
Target:  5'- aGCAACCcUCGCGGU--CCACaauCACCGg -3'
miRNA:   3'- -CGUUGGuGGCGCCGauGGUG---GUGGCg -5'
2812 5' -57.9 NC_001491.2 + 97072 0.68 0.744303
Target:  5'- uGUGGCCACgCGCuaggGGCUAgguCUGCCAgCGCg -3'
miRNA:   3'- -CGUUGGUG-GCG----CCGAU---GGUGGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 97360 0.66 0.833428
Target:  5'- cGCggUCugCGCGGCgcugGCaa-CGCgCGCg -3'
miRNA:   3'- -CGuuGGugGCGCCGa---UGgugGUG-GCG- -5'
2812 5' -57.9 NC_001491.2 + 97463 0.68 0.71533
Target:  5'- aGCuucCCACgGCGcGCUuaAgCGCCGCCGUu -3'
miRNA:   3'- -CGuu-GGUGgCGC-CGA--UgGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 97587 0.69 0.662779
Target:  5'- aCGAUCGCCGCccgcggagagacguGGUcGCCACCGCCu- -3'
miRNA:   3'- cGUUGGUGGCG--------------CCGaUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 98923 0.7 0.605537
Target:  5'- aGCucGCCuuCGCGGCUcuGCCGgCC-CCGCu -3'
miRNA:   3'- -CGu-UGGugGCGCCGA--UGGU-GGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 98959 0.71 0.585529
Target:  5'- cGCA--UACCGCGGCUACCAgCGguaGCa -3'
miRNA:   3'- -CGUugGUGGCGCCGAUGGUgGUgg-CG- -5'
2812 5' -57.9 NC_001491.2 + 102823 0.66 0.857077
Target:  5'- uGCGGCCA-CGCGGgUGgCGCCuguaaugaCGCa -3'
miRNA:   3'- -CGUUGGUgGCGCCgAUgGUGGug------GCG- -5'
2812 5' -57.9 NC_001491.2 + 104823 0.66 0.833428
Target:  5'- uCAGCCcauagucuACCGCGGUgGCCAUguCCaGCu -3'
miRNA:   3'- cGUUGG--------UGGCGCCGaUGGUGguGG-CG- -5'
2812 5' -57.9 NC_001491.2 + 106049 0.75 0.359044
Target:  5'- gGCGGCaGCCGCGGCgagGCCaACCAC-GCu -3'
miRNA:   3'- -CGUUGgUGGCGCCGa--UGG-UGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 106082 0.66 0.833428
Target:  5'- cGCAAUCcCCGCGGCgaaggACagacCCAgCGCn -3'
miRNA:   3'- -CGUUGGuGGCGCCGa----UGgu--GGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 106389 0.7 0.62562
Target:  5'- -gGGCCGCCGCcaaGCuUGCCGCCGCUa- -3'
miRNA:   3'- cgUUGGUGGCGc--CG-AUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 106872 0.68 0.744303
Target:  5'- -aGACCugCGCgugacgcuGGCUAaauUCACCAUUGCg -3'
miRNA:   3'- cgUUGGugGCG--------CCGAU---GGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 111680 0.67 0.772425
Target:  5'- -gGACUGCCGgGGCU-CC-CCgACUGCa -3'
miRNA:   3'- cgUUGGUGGCgCCGAuGGuGG-UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 114265 0.68 0.71533
Target:  5'- aGCc-CCGgCGUGGCccagGCCcuCCGCCGCg -3'
miRNA:   3'- -CGuuGGUgGCGCCGa---UGGu-GGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 114446 0.69 0.685739
Target:  5'- uGCccAUCACCGaGGCU-CC-CCGCCGCc -3'
miRNA:   3'- -CGu-UGGUGGCgCCGAuGGuGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 114564 0.69 0.675778
Target:  5'- uGCGGCCGgCGCGGC-GCUGggGCCGUg -3'
miRNA:   3'- -CGUUGGUgGCGCCGaUGGUggUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.