miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 114936 0.67 0.808191
Target:  5'- cGCuGGCC-CCGgGaGC-GCCACCucaGCCGCg -3'
miRNA:   3'- -CG-UUGGuGGCgC-CGaUGGUGG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 114970 0.7 0.615572
Target:  5'- gGCcGCCcugacuCCGCGGgUcGCCugCGCCGUg -3'
miRNA:   3'- -CGuUGGu-----GGCGCCgA-UGGugGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 115488 0.7 0.59552
Target:  5'- gGCcACCAUCGCGGC--CCGCUGCaGCg -3'
miRNA:   3'- -CGuUGGUGGCGCCGauGGUGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 115609 0.72 0.536186
Target:  5'- cGCGGCCcagcgaCGCGGCUugCGCgGCCu- -3'
miRNA:   3'- -CGUUGGug----GCGCCGAugGUGgUGGcg -5'
2812 5' -57.9 NC_001491.2 + 116045 0.77 0.280585
Target:  5'- aGCGGCggaggCGCCGgGGCUacgACCGCCACCuGCu -3'
miRNA:   3'- -CGUUG-----GUGGCgCCGA---UGGUGGUGG-CG- -5'
2812 5' -57.9 NC_001491.2 + 116180 0.68 0.744303
Target:  5'- gGCGGCgaGCCcuucucCGGCU-CCGCgGCCGCg -3'
miRNA:   3'- -CGUUGg-UGGc-----GCCGAuGGUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116363 0.68 0.725067
Target:  5'- gGUGGCCcggACCGUGGC-GCCGCUGgUGCg -3'
miRNA:   3'- -CGUUGG---UGGCGCCGaUGGUGGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 116595 0.74 0.425054
Target:  5'- uGC-GCCuCCGCGGCgggGCguCCGCCGUc -3'
miRNA:   3'- -CGuUGGuGGCGCCGa--UGguGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116725 0.77 0.27417
Target:  5'- -gGGCC-CCGacgcaaGGCUGCCGCgGCCGCg -3'
miRNA:   3'- cgUUGGuGGCg-----CCGAUGGUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116846 0.78 0.232525
Target:  5'- --cGCCGCCGUggccGGCUACCcggcccagGCCGCCGCu -3'
miRNA:   3'- cguUGGUGGCG----CCGAUGG--------UGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116975 0.81 0.169327
Target:  5'- cGCGGCCGCCuCGGUgGCCaugaGCCGCCGCu -3'
miRNA:   3'- -CGUUGGUGGcGCCGaUGG----UGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 117864 0.77 0.280585
Target:  5'- cCGGCCGCUGgGGCcGCCACCccgaagagcuGCCGCu -3'
miRNA:   3'- cGUUGGUGGCgCCGaUGGUGG----------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 118308 0.66 0.841497
Target:  5'- gGCAcCCAgCC-CGGCU-CCGggcUCGCCGCg -3'
miRNA:   3'- -CGUuGGU-GGcGCCGAuGGU---GGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 118341 0.73 0.442655
Target:  5'- --uACC-CCgGCGGCUGCCGCCcaGCCGg -3'
miRNA:   3'- cguUGGuGG-CGCCGAUGGUGG--UGGCg -5'
2812 5' -57.9 NC_001491.2 + 118539 0.77 0.285146
Target:  5'- cGCAGCCAgCGCGGCcgaagagggguucacCCAgcCCGCCGCg -3'
miRNA:   3'- -CGUUGGUgGCGCCGau-------------GGU--GGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 118736 0.8 0.186938
Target:  5'- aGCGcCCGCCGCGGaaccCCGCCACCGg -3'
miRNA:   3'- -CGUuGGUGGCGCCgau-GGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 121159 0.71 0.555777
Target:  5'- cCGACCACCGaccaccgACCACCACCGa -3'
miRNA:   3'- cGUUGGUGGCgccga--UGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 123023 0.7 0.605537
Target:  5'- cGCGugCGCCGCGGUguccgUGCUggucggguauaGCCcguCCGCg -3'
miRNA:   3'- -CGUugGUGGCGCCG-----AUGG-----------UGGu--GGCG- -5'
2812 5' -57.9 NC_001491.2 + 123086 0.68 0.744303
Target:  5'- uGCcuCCGCCGacaCGGC-GCgCACgACCGCg -3'
miRNA:   3'- -CGuuGGUGGC---GCCGaUG-GUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 123136 0.73 0.433803
Target:  5'- cGCGGCCAggccuCCGCgGGCggcCCGgCGCCGCu -3'
miRNA:   3'- -CGUUGGU-----GGCG-CCGau-GGUgGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.