Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2812 | 5' | -57.9 | NC_001491.2 | + | 106082 | 0.66 | 0.833428 |
Target: 5'- cGCAAUCcCCGCGGCgaaggACagacCCAgCGCn -3' miRNA: 3'- -CGUUGGuGGCGCCGa----UGgu--GGUgGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 106049 | 0.75 | 0.359044 |
Target: 5'- gGCGGCaGCCGCGGCgagGCCaACCAC-GCu -3' miRNA: 3'- -CGUUGgUGGCGCCGa--UGG-UGGUGgCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 104823 | 0.66 | 0.833428 |
Target: 5'- uCAGCCcauagucuACCGCGGUgGCCAUguCCaGCu -3' miRNA: 3'- cGUUGG--------UGGCGCCGaUGGUGguGG-CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 102823 | 0.66 | 0.857077 |
Target: 5'- uGCGGCCA-CGCGGgUGgCGCCuguaaugaCGCa -3' miRNA: 3'- -CGUUGGUgGCGCCgAUgGUGGug------GCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 98959 | 0.71 | 0.585529 |
Target: 5'- cGCA--UACCGCGGCUACCAgCGguaGCa -3' miRNA: 3'- -CGUugGUGGCGCCGAUGGUgGUgg-CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 98923 | 0.7 | 0.605537 |
Target: 5'- aGCucGCCuuCGCGGCUcuGCCGgCC-CCGCu -3' miRNA: 3'- -CGu-UGGugGCGCCGA--UGGU-GGuGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 97587 | 0.69 | 0.662779 |
Target: 5'- aCGAUCGCCGCccgcggagagacguGGUcGCCACCGCCu- -3' miRNA: 3'- cGUUGGUGGCG--------------CCGaUGGUGGUGGcg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 97463 | 0.68 | 0.71533 |
Target: 5'- aGCuucCCACgGCGcGCUuaAgCGCCGCCGUu -3' miRNA: 3'- -CGuu-GGUGgCGC-CGA--UgGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 97360 | 0.66 | 0.833428 |
Target: 5'- cGCggUCugCGCGGCgcugGCaa-CGCgCGCg -3' miRNA: 3'- -CGuuGGugGCGCCGa---UGgugGUG-GCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 97072 | 0.68 | 0.744303 |
Target: 5'- uGUGGCCACgCGCuaggGGCUAgguCUGCCAgCGCg -3' miRNA: 3'- -CGUUGGUG-GCG----CCGAU---GGUGGUgGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 92785 | 0.68 | 0.744303 |
Target: 5'- aGCAACCcUCGCGGU--CCACaauCACCGg -3' miRNA: 3'- -CGUUGGuGGCGCCGauGGUG---GUGGCg -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 91814 | 0.69 | 0.685739 |
Target: 5'- cGC-ACCACUGCGGgUGgUACUGCgGCc -3' miRNA: 3'- -CGuUGGUGGCGCCgAUgGUGGUGgCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 85685 | 0.68 | 0.734728 |
Target: 5'- cCGGCCACgGCGGCguggcCCACguCCaGCc -3' miRNA: 3'- cGUUGGUGgCGCCGau---GGUGguGG-CG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 85149 | 0.7 | 0.62562 |
Target: 5'- uCGGCgACCGCGGCUucuaugugcgauGCCGCaguaACgGCg -3' miRNA: 3'- cGUUGgUGGCGCCGA------------UGGUGg---UGgCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 84943 | 0.66 | 0.857077 |
Target: 5'- cGCAACCAgaguaaacgcguCaaaGCGGCcAUCGgCAUCGCa -3' miRNA: 3'- -CGUUGGU------------Gg--CGCCGaUGGUgGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 83856 | 0.71 | 0.544975 |
Target: 5'- aGgAACCGgUGUGGCUguagucgGCCGCUAUCGCu -3' miRNA: 3'- -CgUUGGUgGCGCCGA-------UGGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 83663 | 0.68 | 0.725067 |
Target: 5'- aGUAGCCAagaCGCuGCagUCGCCAUCGCa -3' miRNA: 3'- -CGUUGGUg--GCGcCGauGGUGGUGGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 82630 | 0.7 | 0.615572 |
Target: 5'- -gAGCCugcACCGCGcGC-GCUACCAgCCGCg -3' miRNA: 3'- cgUUGG---UGGCGC-CGaUGGUGGU-GGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 81320 | 0.66 | 0.825182 |
Target: 5'- gGCGGCCugGCCGUgGGCaacgcCCGCCGgCGUg -3' miRNA: 3'- -CGUUGG--UGGCG-CCGau---GGUGGUgGCG- -5' |
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2812 | 5' | -57.9 | NC_001491.2 | + | 81240 | 0.67 | 0.816767 |
Target: 5'- gGCGAUU-CC-CGGUguugACCACgCGCCGCa -3' miRNA: 3'- -CGUUGGuGGcGCCGa---UGGUG-GUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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