miRNA display CGI


Results 101 - 120 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 49699 0.68 0.712394
Target:  5'- cGCGGCCACgGUagauuguuguuuggGGCcaaacACC-CCACCGCc -3'
miRNA:   3'- -CGUUGGUGgCG--------------CCGa----UGGuGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 43057 0.69 0.705523
Target:  5'- gGCGgagGCUAUCuuuGCGGCcGCCGCCcguCCGCu -3'
miRNA:   3'- -CGU---UGGUGG---CGCCGaUGGUGGu--GGCG- -5'
2812 5' -57.9 NC_001491.2 + 129509 0.69 0.705523
Target:  5'- aGCGGCCGuuGUGGgaGCCGCgGUCGUu -3'
miRNA:   3'- -CGUUGGUggCGCCgaUGGUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 91814 0.69 0.685739
Target:  5'- cGC-ACCACUGCGGgUGgUACUGCgGCc -3'
miRNA:   3'- -CGuUGGUGGCGCCgAUgGUGGUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 114446 0.69 0.685739
Target:  5'- uGCccAUCACCGaGGCU-CC-CCGCCGCc -3'
miRNA:   3'- -CGu-UGGUGGCgCCGAuGGuGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 85685 0.68 0.734728
Target:  5'- cCGGCCACgGCGGCguggcCCACguCCaGCc -3'
miRNA:   3'- cGUUGGUGgCGCCGau---GGUGguGG-CG- -5'
2812 5' -57.9 NC_001491.2 + 106872 0.68 0.744303
Target:  5'- -aGACCugCGCgugacgcuGGCUAaauUCACCAUUGCg -3'
miRNA:   3'- cgUUGGugGCG--------CCGAU---GGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 64734 0.67 0.781569
Target:  5'- cGCGGCUggggaaACCGCGGCcucggcgugGgCAUCACCGg -3'
miRNA:   3'- -CGUUGG------UGGCGCCGa--------UgGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 133906 0.67 0.781569
Target:  5'- aGCAuuaguaCACaCGCGGUcgggauaACCACCAUUGCg -3'
miRNA:   3'- -CGUug----GUG-GCGCCGa------UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 111680 0.67 0.772425
Target:  5'- -gGACUGCCGgGGCU-CC-CCgACUGCa -3'
miRNA:   3'- cgUUGGUGGCgCCGAuGGuGG-UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 147395 0.68 0.76688
Target:  5'- cCGGCCuggGCCGcCGGCUccaggggcucggagcGCCGCuUGCCGCu -3'
miRNA:   3'- cGUUGG---UGGC-GCCGA---------------UGGUG-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 48944 0.68 0.76316
Target:  5'- -gAACgCACC-CGGCUGCCAgCCuCCGg -3'
miRNA:   3'- cgUUG-GUGGcGCCGAUGGU-GGuGGCg -5'
2812 5' -57.9 NC_001491.2 + 31903 0.68 0.762228
Target:  5'- aGCAGUCggugugaGCCGCGGUgcCCGCCuuCGCg -3'
miRNA:   3'- -CGUUGG-------UGGCGCCGauGGUGGugGCG- -5'
2812 5' -57.9 NC_001491.2 + 1790 0.68 0.753784
Target:  5'- cGCcguCCAcgcCCGCGGCcGCUcuGCC-CCGCg -3'
miRNA:   3'- -CGuu-GGU---GGCGCCGaUGG--UGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 42555 0.68 0.753784
Target:  5'- aGC-ACUGCCGCGuaUAUCuCgGCCGCa -3'
miRNA:   3'- -CGuUGGUGGCGCcgAUGGuGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 41385 0.68 0.744303
Target:  5'- gGCcuuguCCAgCGCGGCUGCCACacuUUGUg -3'
miRNA:   3'- -CGuu---GGUgGCGCCGAUGGUGgu-GGCG- -5'
2812 5' -57.9 NC_001491.2 + 92785 0.68 0.744303
Target:  5'- aGCAACCcUCGCGGU--CCACaauCACCGg -3'
miRNA:   3'- -CGUUGGuGGCGCCGauGGUG---GUGGCg -5'
2812 5' -57.9 NC_001491.2 + 116180 0.68 0.744303
Target:  5'- gGCGGCgaGCCcuucucCGGCU-CCGCgGCCGCg -3'
miRNA:   3'- -CGUUGg-UGGc-----GCCGAuGGUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 123086 0.68 0.744303
Target:  5'- uGCcuCCGCCGacaCGGC-GCgCACgACCGCg -3'
miRNA:   3'- -CGuuGGUGGC---GCCGaUG-GUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 97072 0.68 0.744303
Target:  5'- uGUGGCCACgCGCuaggGGCUAgguCUGCCAgCGCg -3'
miRNA:   3'- -CGUUGGUG-GCG----CCGAU---GGUGGUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.