miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 97360 0.66 0.833428
Target:  5'- cGCggUCugCGCGGCgcugGCaa-CGCgCGCg -3'
miRNA:   3'- -CGuuGGugGCGCCGa---UGgugGUG-GCG- -5'
2812 5' -57.9 NC_001491.2 + 66069 0.66 0.830972
Target:  5'- cGguGCCuucucaguauauACCGcCGGCUuacaauucccugauGCCACCAUCGa -3'
miRNA:   3'- -CguUGG------------UGGC-GCCGA--------------UGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 81320 0.66 0.825182
Target:  5'- gGCGGCCugGCCGUgGGCaacgcCCGCCGgCGUg -3'
miRNA:   3'- -CGUUGG--UGGCG-CCGau---GGUGGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 137373 0.66 0.825182
Target:  5'- aGUAAgCGCCaCGcGCcGCCGCCugUGCc -3'
miRNA:   3'- -CGUUgGUGGcGC-CGaUGGUGGugGCG- -5'
2812 5' -57.9 NC_001491.2 + 81240 0.67 0.816767
Target:  5'- gGCGAUU-CC-CGGUguugACCACgCGCCGCa -3'
miRNA:   3'- -CGUUGGuGGcGCCGa---UGGUG-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 80519 0.67 0.816767
Target:  5'- cGCGuCCGgCGCGGCgguUGCCAgCACgGg -3'
miRNA:   3'- -CGUuGGUgGCGCCG---AUGGUgGUGgCg -5'
2812 5' -57.9 NC_001491.2 + 28603 0.67 0.808191
Target:  5'- cGCAGCCG-CGCGcGCUAgguauguagcguCCAUCAUCGg -3'
miRNA:   3'- -CGUUGGUgGCGC-CGAU------------GGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 114936 0.67 0.808191
Target:  5'- cGCuGGCC-CCGgGaGC-GCCACCucaGCCGCg -3'
miRNA:   3'- -CG-UUGGuGGCgC-CGaUGGUGG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 14411 0.67 0.79946
Target:  5'- aGCGGCC-UCGCGGUagUACCugucgcgcACCACCu- -3'
miRNA:   3'- -CGUUGGuGGCGCCG--AUGG--------UGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 56520 0.67 0.790583
Target:  5'- gGCAGCCaugACCGaGGCUAgccgUCGCUcuauACCGCu -3'
miRNA:   3'- -CGUUGG---UGGCgCCGAU----GGUGG----UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 147191 0.67 0.785191
Target:  5'- gGCAGCagguggcggucguaGCCcCGGC-GCCuCCGCCGCu -3'
miRNA:   3'- -CGUUGg-------------UGGcGCCGaUGGuGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 64734 0.67 0.781569
Target:  5'- cGCGGCUggggaaACCGCGGCcucggcgugGgCAUCACCGg -3'
miRNA:   3'- -CGUUGG------UGGCGCCGa--------UgGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 133906 0.67 0.781569
Target:  5'- aGCAuuaguaCACaCGCGGUcgggauaACCACCAUUGCg -3'
miRNA:   3'- -CGUug----GUG-GCGCCGa------UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 111680 0.67 0.772425
Target:  5'- -gGACUGCCGgGGCU-CC-CCgACUGCa -3'
miRNA:   3'- cgUUGGUGGCgCCGAuGGuGG-UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 147395 0.68 0.76688
Target:  5'- cCGGCCuggGCCGcCGGCUccaggggcucggagcGCCGCuUGCCGCu -3'
miRNA:   3'- cGUUGG---UGGC-GCCGA---------------UGGUG-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 48944 0.68 0.76316
Target:  5'- -gAACgCACC-CGGCUGCCAgCCuCCGg -3'
miRNA:   3'- cgUUG-GUGGcGCCGAUGGU-GGuGGCg -5'
2812 5' -57.9 NC_001491.2 + 31903 0.68 0.762228
Target:  5'- aGCAGUCggugugaGCCGCGGUgcCCGCCuuCGCg -3'
miRNA:   3'- -CGUUGG-------UGGCGCCGauGGUGGugGCG- -5'
2812 5' -57.9 NC_001491.2 + 1790 0.68 0.753784
Target:  5'- cGCcguCCAcgcCCGCGGCcGCUcuGCC-CCGCg -3'
miRNA:   3'- -CGuu-GGU---GGCGCCGaUGG--UGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 42555 0.68 0.753784
Target:  5'- aGC-ACUGCCGCGuaUAUCuCgGCCGCa -3'
miRNA:   3'- -CGuUGGUGGCGCcgAUGGuGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 92785 0.68 0.744303
Target:  5'- aGCAACCcUCGCGGU--CCACaauCACCGg -3'
miRNA:   3'- -CGUUGGuGGCGCCGauGGUG---GUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.