miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 17943 0.67 0.482069
Target:  5'- --cGUCGCGGCgGACAGguuccgggccCACGUCGucGCg -3'
miRNA:   3'- cacCAGCGUCG-CUGUC----------GUGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 18330 0.69 0.367361
Target:  5'- cUGGgggCGCaucGGCGACAuGCgACGuUCGGGCg -3'
miRNA:   3'- cACCa--GCG---UCGCUGU-CG-UGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18564 0.68 0.471829
Target:  5'- -cGGcuUCGCgGGCGACAuGCuCGUCGcGGCg -3'
miRNA:   3'- caCC--AGCG-UCGCUGU-CGuGCAGC-UCG- -5'
28121 5' -56.6 NC_005887.1 + 18641 0.66 0.556407
Target:  5'- cUGGaaCGCcGCGACgAGCAUGUCGcccGCg -3'
miRNA:   3'- cACCa-GCGuCGCUG-UCGUGCAGCu--CG- -5'
28121 5' -56.6 NC_005887.1 + 19544 0.72 0.259144
Target:  5'- cGUGGaCGgaCGGCGucgauuacguuGCAgGCACGUCGAGCa -3'
miRNA:   3'- -CACCaGC--GUCGC-----------UGU-CGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 21036 0.74 0.1784
Target:  5'- cGUGG-CGCcaAGCGcCAGCGCGggaacagCGAGCa -3'
miRNA:   3'- -CACCaGCG--UCGCuGUCGUGCa------GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 21266 0.67 0.501814
Target:  5'- -gGGgcacCGCGGCGGCGGCguaugcgcugcugGCGUCGcccacauucacgGGCa -3'
miRNA:   3'- caCCa---GCGUCGCUGUCG-------------UGCAGC------------UCG- -5'
28121 5' -56.6 NC_005887.1 + 21606 0.66 0.542301
Target:  5'- -cGGUCGCcugcAGCGucgugaauuucccgGCAGCcgGCGUCGuuGCg -3'
miRNA:   3'- caCCAGCG----UCGC--------------UGUCG--UGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 22946 0.68 0.458683
Target:  5'- -cGGUaucgcggaccgauaCGCucuGCGGCAGCuGCG-CGAGCa -3'
miRNA:   3'- caCCA--------------GCGu--CGCUGUCG-UGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23223 0.68 0.441794
Target:  5'- -aGGgccaCGC--CGACGGCACG-CGAGCg -3'
miRNA:   3'- caCCa---GCGucGCUGUCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23454 0.67 0.486195
Target:  5'- -cGGcUGcCAGCGGCAGCGCGagcagcaaaagcaucUgCGAGCg -3'
miRNA:   3'- caCCaGC-GUCGCUGUCGUGC---------------A-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23508 0.67 0.482069
Target:  5'- gGUGGaaGCGGCGggauggcggGCGGCuGCGaCGAGCu -3'
miRNA:   3'- -CACCagCGUCGC---------UGUCG-UGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 24294 0.66 0.553142
Target:  5'- cGUGGccaGCAGCGcaucaaacggcuugGCAacacGCACGUCG-GCa -3'
miRNA:   3'- -CACCag-CGUCGC--------------UGU----CGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 25136 0.74 0.188394
Target:  5'- -aGcGcCGCAGCuGCAGguCGUCGAGCa -3'
miRNA:   3'- caC-CaGCGUCGcUGUCguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 25481 0.68 0.441794
Target:  5'- uUGGgcacaaCGCAGCGGCggcucggacgauGGCGCGgCGGGUg -3'
miRNA:   3'- cACCa-----GCGUCGCUG------------UCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 26088 0.69 0.376183
Target:  5'- -cGGcccgCGCGGCGuuuCAugGCGUCGAGCa -3'
miRNA:   3'- caCCa---GCGUCGCu--GUcgUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 26990 0.68 0.4617
Target:  5'- aGUGGuucgUCGaCGGCGGcCAGCGacUCGGGCg -3'
miRNA:   3'- -CACC----AGC-GUCGCU-GUCGUgcAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 27559 0.72 0.246
Target:  5'- aUGGUgugcagcaCGCAGCGgaaguACAGCGCGagcgcgccgUCGAGCg -3'
miRNA:   3'- cACCA--------GCGUCGC-----UGUCGUGC---------AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 28128 0.67 0.480012
Target:  5'- gGUGGUcaagaacagCGCGGCGACcugcaacaccucGCAcgccgacugguCGUCGAGCa -3'
miRNA:   3'- -CACCA---------GCGUCGCUGu-----------CGU-----------GCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 28226 0.67 0.492415
Target:  5'- -cGGUUuugaGCAGCGcgcGCAGCuuCG-CGAGCg -3'
miRNA:   3'- caCCAG----CGUCGC---UGUCGu-GCaGCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.