miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28122 5' -54.2 NC_005887.1 + 16452 0.67 0.685176
Target:  5'- cGCGUGCGCGCGggcaUGcGcUCGaccgCGCGGc -3'
miRNA:   3'- -CGCACGCGUGCag--AC-C-AGCaa--GUGCU- -5'
28122 5' -54.2 NC_005887.1 + 11096 0.67 0.674098
Target:  5'- cGCGUgGCGCAuCGgCUGGU-GcgCGCGAa -3'
miRNA:   3'- -CGCA-CGCGU-GCaGACCAgCaaGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 15006 0.67 0.651829
Target:  5'- cGCGUcguacggcaGCGCGCGgcgUGcGUCGaUCGCGAg -3'
miRNA:   3'- -CGCA---------CGCGUGCag-AC-CAGCaAGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 41295 0.67 0.651829
Target:  5'- uGCGUGUGCuuGUCgagcucGGUcaCGggCACGAc -3'
miRNA:   3'- -CGCACGCGugCAGa-----CCA--GCaaGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 33538 0.67 0.640661
Target:  5'- cGUGaGCGCcuGCuUCUGGUCGggUGCGAg -3'
miRNA:   3'- -CGCaCGCG--UGcAGACCAGCaaGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 12694 0.68 0.628367
Target:  5'- cGCGUugcagggucacgcGCGCACG-CUGGUCGcgCAg-- -3'
miRNA:   3'- -CGCA-------------CGCGUGCaGACCAGCaaGUgcu -5'
28122 5' -54.2 NC_005887.1 + 24429 0.68 0.60715
Target:  5'- uCGUGCGCACG-CaGGUCGcgagCAgGAc -3'
miRNA:   3'- cGCACGCGUGCaGaCCAGCaa--GUgCU- -5'
28122 5' -54.2 NC_005887.1 + 7212 0.69 0.530145
Target:  5'- cGCGUGCGCAggcgcUGUCgGcGUCGggCGCa- -3'
miRNA:   3'- -CGCACGCGU-----GCAGaC-CAGCaaGUGcu -5'
28122 5' -54.2 NC_005887.1 + 40529 0.7 0.50769
Target:  5'- cGCG-GCGCGCGgcagcgacgacggUCUGGcgcUCGcgCACGAg -3'
miRNA:   3'- -CGCaCGCGUGC-------------AGACC---AGCaaGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 7448 0.7 0.487727
Target:  5'- gGCGUGCGCGuCGUgaucGGcaugcCGUUCGCGAa -3'
miRNA:   3'- -CGCACGCGU-GCAga--CCa----GCAAGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 14532 0.7 0.4815
Target:  5'- cGCGagGCccgacacgacgccuuGCACgGUCUGGUCGaUCGCGGu -3'
miRNA:   3'- -CGCa-CG---------------CGUG-CAGACCAGCaAGUGCU- -5'
28122 5' -54.2 NC_005887.1 + 41744 0.7 0.467123
Target:  5'- cCG-GCGCGCGggcUCUGGUCGaagacCACGAu -3'
miRNA:   3'- cGCaCGCGUGC---AGACCAGCaa---GUGCU- -5'
28122 5' -54.2 NC_005887.1 + 12071 0.71 0.446977
Target:  5'- uGCGUGCGCcggAUGUCUGcaaCGUgggCGCGAc -3'
miRNA:   3'- -CGCACGCG---UGCAGACca-GCAa--GUGCU- -5'
28122 5' -54.2 NC_005887.1 + 28107 0.71 0.427323
Target:  5'- gGCGUGCGUgACgGUCUGGUUGguggUCAaGAa -3'
miRNA:   3'- -CGCACGCG-UG-CAGACCAGCa---AGUgCU- -5'
28122 5' -54.2 NC_005887.1 + 8067 1.11 0.000764
Target:  5'- uGCGUGCGCACGUCUGGUCGUUCACGAa -3'
miRNA:   3'- -CGCACGCGUGCAGACCAGCAAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.