miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 3' -60.3 NC_005887.1 + 32418 0.66 0.427602
Target:  5'- gAC-GUGGcCGGCG-GCGAUgUGGCCGg -3'
miRNA:   3'- aUGcCACC-GCUGCuUGCUGgGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 38528 0.66 0.427602
Target:  5'- gGCGGguagggugGGCGcuuacaccaGCGGGCGcCaCUGGCCGg -3'
miRNA:   3'- aUGCCa-------CCGC---------UGCUUGCuG-GGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 871 0.66 0.418319
Target:  5'- gACGcGUGGCccgcgccgccgGACGAgucagGCGGCCuCGGCUu -3'
miRNA:   3'- aUGC-CACCG-----------CUGCU-----UGCUGG-GCCGGc -5'
28124 3' -60.3 NC_005887.1 + 34105 0.66 0.418319
Target:  5'- aGCGGUGaCGcCGAGCG-CUCGGCa- -3'
miRNA:   3'- aUGCCACcGCuGCUUGCuGGGCCGgc -5'
28124 3' -60.3 NC_005887.1 + 7478 0.66 0.418319
Target:  5'- --aGGcGGCGGCGGguGCGACCgUGGCg- -3'
miRNA:   3'- augCCaCCGCUGCU--UGCUGG-GCCGgc -5'
28124 3' -60.3 NC_005887.1 + 19186 0.66 0.409159
Target:  5'- aGCGGcgcgGGCGugGAgacagGCGGCgCGGUUa -3'
miRNA:   3'- aUGCCa---CCGCugCU-----UGCUGgGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 22261 0.66 0.409159
Target:  5'- gACGGUGGCG-CGcagcaGGCGAUcggauuucucgUCGGCCu -3'
miRNA:   3'- aUGCCACCGCuGC-----UUGCUG-----------GGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 16582 0.66 0.409159
Target:  5'- gGCGccGGCGGCGAcGCGAU-CGGCCu -3'
miRNA:   3'- aUGCcaCCGCUGCU-UGCUGgGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 5907 0.66 0.409159
Target:  5'- cGCGGUGaGCucCGcuucgcccuucGCGACCCGcGCCGa -3'
miRNA:   3'- aUGCCAC-CGcuGCu----------UGCUGGGC-CGGC- -5'
28124 3' -60.3 NC_005887.1 + 39917 0.66 0.40825
Target:  5'- aGCGGUGaGCGGuCGAuugauguGCGACggCGGCCc -3'
miRNA:   3'- aUGCCAC-CGCU-GCU-------UGCUGg-GCCGGc -5'
28124 3' -60.3 NC_005887.1 + 24649 0.66 0.403723
Target:  5'- cACGGUGGUGA-GAAucCGcuucgacauuguccaGCCgCGGCCGg -3'
miRNA:   3'- aUGCCACCGCUgCUU--GC---------------UGG-GCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 40600 0.66 0.391219
Target:  5'- cGCGGUuccuCGACGAGCGugUgUGGCCGc -3'
miRNA:   3'- aUGCCAcc--GCUGCUUGCugG-GCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 31319 0.66 0.391219
Target:  5'- -cCGGUGGUcACGucccacgugcCGACCgGGCCGu -3'
miRNA:   3'- auGCCACCGcUGCuu--------GCUGGgCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 27399 0.66 0.382444
Target:  5'- cUGCGcGUGGCG-CaguCGACgUGGCCGg -3'
miRNA:   3'- -AUGC-CACCGCuGcuuGCUGgGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 5812 0.66 0.382444
Target:  5'- gACGGcGGCGAuCGAGuCGGCgCgGGUCGc -3'
miRNA:   3'- aUGCCaCCGCU-GCUU-GCUG-GgCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 39771 0.66 0.373801
Target:  5'- --aGGUGGCGGCGGGCacucgcgauaccGACCCaauuuGCUGa -3'
miRNA:   3'- augCCACCGCUGCUUG------------CUGGGc----CGGC- -5'
28124 3' -60.3 NC_005887.1 + 28062 0.67 0.365291
Target:  5'- aACGccGGcCGACGAcgcgauuCGGCCCGaGCCGg -3'
miRNA:   3'- aUGCcaCC-GCUGCUu------GCUGGGC-CGGC- -5'
28124 3' -60.3 NC_005887.1 + 41719 0.67 0.356916
Target:  5'- gGCGaugacgGGCGGCGAucCGAuCCCGGCgCGc -3'
miRNA:   3'- aUGCca----CCGCUGCUu-GCU-GGGCCG-GC- -5'
28124 3' -60.3 NC_005887.1 + 41600 0.67 0.356916
Target:  5'- gGCGGcccagGuGCGGCGGcCGGCgCGGCCc -3'
miRNA:   3'- aUGCCa----C-CGCUGCUuGCUGgGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 12565 0.67 0.343798
Target:  5'- gACGGccgccggcaugcgcaUGGUGucCGc-CGACCCGGCCGc -3'
miRNA:   3'- aUGCC---------------ACCGCu-GCuuGCUGGGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.