Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28124 | 3' | -60.3 | NC_005887.1 | + | 7478 | 0.66 | 0.418319 |
Target: 5'- --aGGcGGCGGCGGguGCGACCgUGGCg- -3' miRNA: 3'- augCCaCCGCUGCU--UGCUGG-GCCGgc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 32286 | 0.71 | 0.196467 |
Target: 5'- --aGGUGGCggguuugauGACGAGCGGCaccuCUGGCCGc -3' miRNA: 3'- augCCACCG---------CUGCUUGCUG----GGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 7366 | 0.72 | 0.167662 |
Target: 5'- gACGGacGGCGACacGACGACCCacagcgggcGGCCGg -3' miRNA: 3'- aUGCCa-CCGCUGc-UUGCUGGG---------CCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 13379 | 0.74 | 0.111589 |
Target: 5'- aUGCGGccGGCGuugcCGAACG-CCUGGCCGa -3' miRNA: 3'- -AUGCCa-CCGCu---GCUUGCuGGGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 27399 | 0.66 | 0.382444 |
Target: 5'- cUGCGcGUGGCG-CaguCGACgUGGCCGg -3' miRNA: 3'- -AUGC-CACCGCuGcuuGCUGgGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 39771 | 0.66 | 0.373801 |
Target: 5'- --aGGUGGCGGCGGGCacucgcgauaccGACCCaauuuGCUGa -3' miRNA: 3'- augCCACCGCUGCUUG------------CUGGGc----CGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 14911 | 0.67 | 0.340574 |
Target: 5'- cUGCGGUGuGCacgcccGCGAACGugCCcGCCa -3' miRNA: 3'- -AUGCCAC-CGc-----UGCUUGCugGGcCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 16005 | 0.67 | 0.340574 |
Target: 5'- gGCGcGUGGcCGGCGcauCGAUuCCGGCCc -3' miRNA: 3'- aUGC-CACC-GCUGCuu-GCUG-GGCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 10333 | 0.68 | 0.29269 |
Target: 5'- cACGGUcugcccguugaccuGGCGGCGGACGAUCacccacaGGUCa -3' miRNA: 3'- aUGCCA--------------CCGCUGCUUGCUGGg------CCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 15767 | 0.69 | 0.260509 |
Target: 5'- cACGccGGCGGCGGAaucAUCCGGCCGc -3' miRNA: 3'- aUGCcaCCGCUGCUUgc-UGGGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 24636 | 0.68 | 0.302123 |
Target: 5'- cGCaGGUgugaagcugacGGCGAucaUGGGCG-CCCGGCCGa -3' miRNA: 3'- aUG-CCA-----------CCGCU---GCUUGCuGGGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 5907 | 0.66 | 0.409159 |
Target: 5'- cGCGGUGaGCucCGcuucgcccuucGCGACCCGcGCCGa -3' miRNA: 3'- aUGCCAC-CGcuGCu----------UGCUGGGC-CGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 31411 | 0.69 | 0.247714 |
Target: 5'- gAC-GUGGgccauCGACG-ACGGCCCGGUCGg -3' miRNA: 3'- aUGcCACC-----GCUGCuUGCUGGGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 16582 | 0.66 | 0.409159 |
Target: 5'- gGCGccGGCGGCGAcGCGAU-CGGCCu -3' miRNA: 3'- aUGCcaCCGCUGCU-UGCUGgGCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 28625 | 0.68 | 0.309538 |
Target: 5'- aGCGGgcGGCGACGccuacaaauucAGCaGCCCGGCgCGc -3' miRNA: 3'- aUGCCa-CCGCUGC-----------UUGcUGGGCCG-GC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 11382 | 0.7 | 0.223687 |
Target: 5'- cGCGGUuGCGGCGcucgcugcCGAgCCGGCCGc -3' miRNA: 3'- aUGCCAcCGCUGCuu------GCUgGGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 13212 | 0.72 | 0.163246 |
Target: 5'- cGCGGcaaGCGACGAGacgaGGCCCGGCaCGc -3' miRNA: 3'- aUGCCac-CGCUGCUUg---CUGGGCCG-GC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 39917 | 0.66 | 0.40825 |
Target: 5'- aGCGGUGaGCGGuCGAuugauguGCGACggCGGCCc -3' miRNA: 3'- aUGCCAC-CGCU-GCU-------UGCUGg-GCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 28062 | 0.67 | 0.365291 |
Target: 5'- aACGccGGcCGACGAcgcgauuCGGCCCGaGCCGg -3' miRNA: 3'- aUGCcaCC-GCUGCUu------GCUGGGC-CGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 14732 | 0.69 | 0.276568 |
Target: 5'- gUGCGGggcagcgucgaaccGGCGACGGGCaGCaCCGcGCCGg -3' miRNA: 3'- -AUGCCa-------------CCGCUGCUUGcUG-GGC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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