miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 3' -51.3 NC_005887.1 + 36163 0.66 0.894668
Target:  5'- uCGACGAggaaauggccgcCUACGUGcagcuguacaUCGACGGcgugcgcgagcGCGUCGa -3'
miRNA:   3'- -GCUGUU------------GAUGCAC----------AGCUGCC-----------UGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 13375 0.66 0.894668
Target:  5'- gCGAUGGCgcucGCGcUGaaggccggcgCGGCGGACGUCGg -3'
miRNA:   3'- -GCUGUUGa---UGC-ACa---------GCUGCCUGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 41351 0.66 0.887222
Target:  5'- gCGGCAGCagcgcgcccgUGCGcagGUCGACGG-CGcCAu -3'
miRNA:   3'- -GCUGUUG----------AUGCa--CAGCUGCCuGCaGU- -5'
28125 3' -51.3 NC_005887.1 + 5085 0.66 0.887222
Target:  5'- uGGCuucgguCUGCGccUCGGCGGGCGUgAg -3'
miRNA:   3'- gCUGuu----GAUGCacAGCUGCCUGCAgU- -5'
28125 3' -51.3 NC_005887.1 + 4374 0.66 0.871507
Target:  5'- cCGGCAGCUGgcCGgccUCGGCgaGGAUGUCGa -3'
miRNA:   3'- -GCUGUUGAU--GCac-AGCUG--CCUGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 11779 0.66 0.871507
Target:  5'- uCGGCGGCguccuCGcUGcUCGGCGG-CGUCGg -3'
miRNA:   3'- -GCUGUUGau---GC-AC-AGCUGCCuGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 21112 0.66 0.869058
Target:  5'- cCGACGACgaACcUGUCGAgacgaucgccugacCGGACGUUg -3'
miRNA:   3'- -GCUGUUGa-UGcACAGCU--------------GCCUGCAGu -5'
28125 3' -51.3 NC_005887.1 + 15422 0.66 0.863252
Target:  5'- uCGACGACgcaUACGUGUUcggucaaccgGACG-ACGUCGc -3'
miRNA:   3'- -GCUGUUG---AUGCACAG----------CUGCcUGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 13917 0.67 0.845981
Target:  5'- uGGCAcgUACGcggUGUCGACGGG-GUCGa -3'
miRNA:   3'- gCUGUugAUGC---ACAGCUGCCUgCAGU- -5'
28125 3' -51.3 NC_005887.1 + 35057 0.67 0.827759
Target:  5'- gCGAgGucGCUGcCGUcGUCGGCGGGCG-CGa -3'
miRNA:   3'- -GCUgU--UGAU-GCA-CAGCUGCCUGCaGU- -5'
28125 3' -51.3 NC_005887.1 + 33953 0.67 0.827759
Target:  5'- aCGACGACcaaUACGg--CGACGGAgcgcUGUCGg -3'
miRNA:   3'- -GCUGUUG---AUGCacaGCUGCCU----GCAGU- -5'
28125 3' -51.3 NC_005887.1 + 21665 0.68 0.798816
Target:  5'- uGACGG--GCGUGUCG-CuGACGUCGg -3'
miRNA:   3'- gCUGUUgaUGCACAGCuGcCUGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 12081 0.68 0.798816
Target:  5'- gCGAgCGGCgUGCGUG-CGcCGGAUGUCu -3'
miRNA:   3'- -GCU-GUUG-AUGCACaGCuGCCUGCAGu -5'
28125 3' -51.3 NC_005887.1 + 29420 0.68 0.778577
Target:  5'- uCGACAGCU-CGUcggccgaguaGUCGuCGG-CGUCAg -3'
miRNA:   3'- -GCUGUUGAuGCA----------CAGCuGCCuGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 6606 0.68 0.778577
Target:  5'- gCGACAGCccCGUGaauUCGGCGGGggcgaugcCGUCAu -3'
miRNA:   3'- -GCUGUUGauGCAC---AGCUGCCU--------GCAGU- -5'
28125 3' -51.3 NC_005887.1 + 6844 0.68 0.778577
Target:  5'- -uGCAACaucgACGUGUCGGaccuCGcGACGUCGg -3'
miRNA:   3'- gcUGUUGa---UGCACAGCU----GC-CUGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 28768 0.69 0.736268
Target:  5'- uCGACGACUACGacgauuUCG-CGGGCGUg- -3'
miRNA:   3'- -GCUGUUGAUGCac----AGCuGCCUGCAgu -5'
28125 3' -51.3 NC_005887.1 + 14247 0.69 0.703326
Target:  5'- cCGACAGC-GCGUGcaaUCGACGuaaccGAUGUCGa -3'
miRNA:   3'- -GCUGUUGaUGCAC---AGCUGC-----CUGCAGU- -5'
28125 3' -51.3 NC_005887.1 + 16020 0.69 0.703326
Target:  5'- gCGACAGCgGCGUG-CGGCGcGugGcCGg -3'
miRNA:   3'- -GCUGUUGaUGCACaGCUGC-CugCaGU- -5'
28125 3' -51.3 NC_005887.1 + 12540 0.7 0.680975
Target:  5'- cCGACAACUucaaggACGUggcGUCGACGGcCGcCGg -3'
miRNA:   3'- -GCUGUUGA------UGCA---CAGCUGCCuGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.