miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 21580 0.67 0.312117
Target:  5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 3009 0.67 0.312117
Target:  5'- aUGGUC-GCGGC--GGUGcCGCGGCGCu -3'
miRNA:   3'- -ACUAGuCGUCGagCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 17713 0.67 0.312117
Target:  5'- gGAUCGugcccuGCAGCUucaCGGCGCugaccgucgugcGCAGCGUu -3'
miRNA:   3'- aCUAGU------CGUCGA---GCCGCG------------CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 32645 0.68 0.2963
Target:  5'- gUGAUCGaccguguGCAGCUcacCGGUgucGCGCGuGCGCGc -3'
miRNA:   3'- -ACUAGU-------CGUCGA---GCCG---CGCGU-CGCGC- -5'
28126 3' -60 NC_005887.1 + 28281 0.68 0.268591
Target:  5'- -cAUCGGCAcGC-CGagcGCGCGCAGCGUc -3'
miRNA:   3'- acUAGUCGU-CGaGC---CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 16332 0.68 0.297038
Target:  5'- cGAUCuGCugcaucAGCUCGGCGaCGguGCcCGu -3'
miRNA:   3'- aCUAGuCG------UCGAGCCGC-GCguCGcGC- -5'
28126 3' -60 NC_005887.1 + 9919 0.68 0.297038
Target:  5'- cGAUguGCGGCgcgCGGCGUucagguugGCcGCGCu -3'
miRNA:   3'- aCUAguCGUCGa--GCCGCG--------CGuCGCGc -5'
28126 3' -60 NC_005887.1 + 2526 0.68 0.289714
Target:  5'- -cGUCAGCGcCUcgucgaCGGCGcCGUAGCGCGc -3'
miRNA:   3'- acUAGUCGUcGA------GCCGC-GCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 618 0.68 0.289714
Target:  5'- cGGUCuucGCgcuguauccGGCgCGGCGCGCGGCGg- -3'
miRNA:   3'- aCUAGu--CG---------UCGaGCCGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 14951 0.68 0.289714
Target:  5'- ---gUAGCAGCUgGcgcauucugccGCGCGguGCGCGc -3'
miRNA:   3'- acuaGUCGUCGAgC-----------CGCGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 5811 0.68 0.2963
Target:  5'- aGA-CGGCGGCgaucgagUCGGCGCGgGuCGCGa -3'
miRNA:   3'- aCUaGUCGUCG-------AGCCGCGCgUcGCGC- -5'
28126 3' -60 NC_005887.1 + 28203 0.68 0.289714
Target:  5'- cGcAUCAGCGccgcgcGuCUCGGCGguuuugaGCAGCGCGc -3'
miRNA:   3'- aC-UAGUCGU------C-GAGCCGCg------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 14691 0.68 0.289714
Target:  5'- cGAUCGggcucgucGCGGCg-GGCGgGCcgGGCGCGg -3'
miRNA:   3'- aCUAGU--------CGUCGagCCGCgCG--UCGCGC- -5'
28126 3' -60 NC_005887.1 + 41592 0.68 0.282531
Target:  5'- cGGcCAGCGGCggcccaGGUGCGgcggcCGGCGCGg -3'
miRNA:   3'- aCUaGUCGUCGag----CCGCGC-----GUCGCGC- -5'
28126 3' -60 NC_005887.1 + 27559 0.68 0.261832
Target:  5'- aUGGUguGCAGCacgcagCGGaaguacaGCGCgAGCGCGc -3'
miRNA:   3'- -ACUAguCGUCGa-----GCCg------CGCG-UCGCGC- -5'
28126 3' -60 NC_005887.1 + 31701 0.68 0.275491
Target:  5'- -cGUCGGCAGaacCUCGgacGCGUGCGGCGUu -3'
miRNA:   3'- acUAGUCGUC---GAGC---CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 23472 0.68 0.275491
Target:  5'- cUGAUCGacgcGCuGCUgCGGCuGCcagcgGCAGCGCGa -3'
miRNA:   3'- -ACUAGU----CGuCGA-GCCG-CG-----CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 17359 0.68 0.275491
Target:  5'- cGAacCGGC-GUUUGcGCGCGCGGCGCc -3'
miRNA:   3'- aCUa-GUCGuCGAGC-CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 40763 0.68 0.281821
Target:  5'- cGAUCGGCuccugccAGC-CGuGCGCGC-GCGCc -3'
miRNA:   3'- aCUAGUCG-------UCGaGC-CGCGCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 31478 0.68 0.292627
Target:  5'- -cGUCAGCacAGUUCGuagucaccgauugccGCGCGCgcGGCGCGg -3'
miRNA:   3'- acUAGUCG--UCGAGC---------------CGCGCG--UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.