miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 32828 0.7 0.212656
Target:  5'- cGAgcCGGCuGCaUGGCGCGCgccGGCGCGc -3'
miRNA:   3'- aCUa-GUCGuCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 26503 0.7 0.20167
Target:  5'- gGAUCucgcGCGGCUgCaGCGCGCGuucccGCGCGg -3'
miRNA:   3'- aCUAGu---CGUCGA-GcCGCGCGU-----CGCGC- -5'
28126 3' -60 NC_005887.1 + 7447 0.7 0.2071
Target:  5'- -cGUCGGCgAGCUgaacgCGGCGUugucgucggucuGCAGCGCGa -3'
miRNA:   3'- acUAGUCG-UCGA-----GCCGCG------------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 35715 0.7 0.20167
Target:  5'- aGAUCcacgcguGCAGCUCGGU-CGCGGuCGUGg -3'
miRNA:   3'- aCUAGu------CGUCGAGCCGcGCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 30713 0.7 0.19118
Target:  5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3'
miRNA:   3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 4436 0.7 0.212656
Target:  5'- aUGGUugCAGCAGCUCGGCaucgucuCGCAGUuCGa -3'
miRNA:   3'- -ACUA--GUCGUCGAGCCGc------GCGUCGcGC- -5'
28126 3' -60 NC_005887.1 + 28400 0.7 0.212656
Target:  5'- cGAUCAcgcgcacgucGCAGC-CGaGCGCGCgcaGGCGCu -3'
miRNA:   3'- aCUAGU----------CGUCGaGC-CGCGCG---UCGCGc -5'
28126 3' -60 NC_005887.1 + 41531 0.7 0.20167
Target:  5'- aUGAUgAGCAGauccucgcgCGGCGUgccgaGCAGCGCa -3'
miRNA:   3'- -ACUAgUCGUCga-------GCCGCG-----CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 5218 0.7 0.196364
Target:  5'- aGcAUCAGCGGCgcgccgaCGuCGgGCAGCGCGg -3'
miRNA:   3'- aC-UAGUCGUCGa------GCcGCgCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 10169 0.7 0.20167
Target:  5'- cGAUCAGCuGGCcgUCGGCGCGgGcCGCc -3'
miRNA:   3'- aCUAGUCG-UCG--AGCCGCGCgUcGCGc -5'
28126 3' -60 NC_005887.1 + 23970 0.69 0.230097
Target:  5'- cGAccUCGGCccacuGCUCGaGCGCgagGCGGCGCu -3'
miRNA:   3'- aCU--AGUCGu----CGAGC-CGCG---CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 27107 0.69 0.248729
Target:  5'- cGggCGGCAGCgugcgCGGuCGCGCGcucgccgagguuGCGCa -3'
miRNA:   3'- aCuaGUCGUCGa----GCC-GCGCGU------------CGCGc -5'
28126 3' -60 NC_005887.1 + 13448 0.69 0.255212
Target:  5'- cGcUCAGCAcGUUCauccugacgGGCGCGCAGgCGCu -3'
miRNA:   3'- aCuAGUCGU-CGAG---------CCGCGCGUC-GCGc -5'
28126 3' -60 NC_005887.1 + 11368 0.69 0.242383
Target:  5'- cUGAUCAGC-GCg-GGCGU-CAGCGCa -3'
miRNA:   3'- -ACUAGUCGuCGagCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 4695 0.69 0.230096
Target:  5'- uUGAUCgcgccGGCGGCcacCGGCGCcGCGGCGa- -3'
miRNA:   3'- -ACUAG-----UCGUCGa--GCCGCG-CGUCGCgc -5'
28126 3' -60 NC_005887.1 + 41234 0.69 0.228299
Target:  5'- gGAUCAuguucgacaccauuGCGGCUuucUGGCaCGCGGCGCa -3'
miRNA:   3'- aCUAGU--------------CGUCGA---GCCGcGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 40512 0.69 0.242383
Target:  5'- gUGuUCGGCAuccaccacgCGGCGCGCGGCaGCGa -3'
miRNA:   3'- -ACuAGUCGUcga------GCCGCGCGUCG-CGC- -5'
28126 3' -60 NC_005887.1 + 15463 0.69 0.224153
Target:  5'- cGAUCcGCuGCcCGcGCGCGauCAGCGCGg -3'
miRNA:   3'- aCUAGuCGuCGaGC-CGCGC--GUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15964 0.69 0.230096
Target:  5'- aGGUCGGcCAGCU--GCGCGUcgAGCGCa -3'
miRNA:   3'- aCUAGUC-GUCGAgcCGCGCG--UCGCGc -5'
28126 3' -60 NC_005887.1 + 35216 0.69 0.236173
Target:  5'- uUGcgCAGCAGCuugUCGGCcuGCGUGGgGCu -3'
miRNA:   3'- -ACuaGUCGUCG---AGCCG--CGCGUCgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.