miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 32645 0.68 0.2963
Target:  5'- gUGAUCGaccguguGCAGCUcacCGGUgucGCGCGuGCGCGc -3'
miRNA:   3'- -ACUAGU-------CGUCGA---GCCG---CGCGU-CGCGC- -5'
28126 3' -60 NC_005887.1 + 5811 0.68 0.2963
Target:  5'- aGA-CGGCGGCgaucgagUCGGCGCGgGuCGCGa -3'
miRNA:   3'- aCUaGUCGUCG-------AGCCGCGCgUcGCGC- -5'
28126 3' -60 NC_005887.1 + 31478 0.68 0.292627
Target:  5'- -cGUCAGCacAGUUCGuagucaccgauugccGCGCGCgcGGCGCGg -3'
miRNA:   3'- acUAGUCG--UCGAGC---------------CGCGCG--UCGCGC- -5'
28126 3' -60 NC_005887.1 + 27559 0.68 0.261832
Target:  5'- aUGGUguGCAGCacgcagCGGaaguacaGCGCgAGCGCGc -3'
miRNA:   3'- -ACUAguCGUCGa-----GCCg------CGCG-UCGCGC- -5'
28126 3' -60 NC_005887.1 + 26960 0.67 0.335812
Target:  5'- aGAUCcugcaGGCcGUUCGGCGaCGguGUGCc -3'
miRNA:   3'- aCUAG-----UCGuCGAGCCGC-GCguCGCGc -5'
28126 3' -60 NC_005887.1 + 41989 0.67 0.333384
Target:  5'- -uAUCAGCAGCacggccugCGGCccacgucgagugucGcCGCGGCGCGc -3'
miRNA:   3'- acUAGUCGUCGa-------GCCG--------------C-GCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15825 0.67 0.319872
Target:  5'- gGcgCAGguGCagCGcuUGCGCGGCGCGa -3'
miRNA:   3'- aCuaGUCguCGa-GCc-GCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 3009 0.67 0.312117
Target:  5'- aUGGUC-GCGGC--GGUGcCGCGGCGCu -3'
miRNA:   3'- -ACUAGuCGUCGagCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 40756 0.67 0.312117
Target:  5'- cGAUC-GCcGUU-GGCGCGCcGCGCGc -3'
miRNA:   3'- aCUAGuCGuCGAgCCGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 35687 0.67 0.335812
Target:  5'- cGAUCGGCGGC-CGGCuuCGCGGUu-- -3'
miRNA:   3'- aCUAGUCGUCGaGCCGc-GCGUCGcgc -5'
28126 3' -60 NC_005887.1 + 19182 0.67 0.335812
Target:  5'- -cGUgAGCGGCgcgGGCGUggagacagGCGGCGCGg -3'
miRNA:   3'- acUAgUCGUCGag-CCGCG--------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 753 0.67 0.32777
Target:  5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3'
miRNA:   3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 21580 0.67 0.312117
Target:  5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 14310 0.67 0.305261
Target:  5'- aGAcCGGCGGCaagaUCGGaugccgcgccgaacaGCGCGGCGCc -3'
miRNA:   3'- aCUaGUCGUCG----AGCCg--------------CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 12823 0.67 0.304506
Target:  5'- cGA-CGGCGGUguucUCGcGUugcaGCGCGGCGCGa -3'
miRNA:   3'- aCUaGUCGUCG----AGC-CG----CGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 27716 0.67 0.304506
Target:  5'- cGcgCGGCAGCUCaGCGCGCAc---- -3'
miRNA:   3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5'
28126 3' -60 NC_005887.1 + 21384 0.67 0.335811
Target:  5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3'
miRNA:   3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5'
28126 3' -60 NC_005887.1 + 24923 0.67 0.312117
Target:  5'- gGAUCGGCAccguugucgaucGCgacgCGuGCGCGCGggccgccuugcGCGCGg -3'
miRNA:   3'- aCUAGUCGU------------CGa---GC-CGCGCGU-----------CGCGC- -5'
28126 3' -60 NC_005887.1 + 11308 0.67 0.335812
Target:  5'- ---gCGGcCGGCUCGGCaGCG-AGCGCc -3'
miRNA:   3'- acuaGUC-GUCGAGCCG-CGCgUCGCGc -5'
28126 3' -60 NC_005887.1 + 29802 0.67 0.343996
Target:  5'- gGGcCAGUAGCUgGaagucugcggguGUGCGCGGCGCc -3'
miRNA:   3'- aCUaGUCGUCGAgC------------CGCGCGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.