Results 101 - 120 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 21580 | 0.67 | 0.312117 |
Target: 5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3' miRNA: 3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 21384 | 0.67 | 0.335811 |
Target: 5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3' miRNA: 3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 12089 | 0.66 | 0.378151 |
Target: 5'- cGA-CGGUuGCgagCGGCGUGCGuGCGCc -3' miRNA: 3'- aCUaGUCGuCGa--GCCGCGCGU-CGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 41454 | 0.66 | 0.378152 |
Target: 5'- -----cGCuGCUCGGCaCGCcGCGCGa -3' miRNA: 3'- acuaguCGuCGAGCCGcGCGuCGCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 33944 | 0.66 | 0.378152 |
Target: 5'- cGA-CGGC-GCUCGGCgagcacgucgcGUGCGGCGUc -3' miRNA: 3'- aCUaGUCGuCGAGCCG-----------CGCGUCGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 17019 | 0.66 | 0.378152 |
Target: 5'- aGAgcaAGguGCUUGGCaacggaucggauGCGCAGCgGCa -3' miRNA: 3'- aCUag-UCguCGAGCCG------------CGCGUCG-CGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 32776 | 0.66 | 0.369402 |
Target: 5'- ---gCAGcCGGCUCGuGCGCaggauCGGCGCGc -3' miRNA: 3'- acuaGUC-GUCGAGC-CGCGc----GUCGCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 24256 | 0.66 | 0.352324 |
Target: 5'- cGG-CAGCAGCcaCGGCGaguCGCcggauAGCGCGa -3' miRNA: 3'- aCUaGUCGUCGa-GCCGC---GCG-----UCGCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 815 | 0.66 | 0.396063 |
Target: 5'- cGAUCaacAGCcauGCUCGcGCGauCGCGGcCGCGa -3' miRNA: 3'- aCUAG---UCGu--CGAGC-CGC--GCGUC-GCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 12075 | 0.66 | 0.396063 |
Target: 5'- aGGUCGGCAcgucGCUCGGUcaggucaccgacGUGCuggccGCGCa -3' miRNA: 3'- aCUAGUCGU----CGAGCCG------------CGCGu----CGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 30038 | 0.66 | 0.378151 |
Target: 5'- cGA-CAGCAuccGCgCGGCGguguuCGCGGCGCu -3' miRNA: 3'- aCUaGUCGU---CGaGCCGC-----GCGUCGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 27670 | 0.66 | 0.37727 |
Target: 5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3' miRNA: 3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 15042 | 0.66 | 0.360792 |
Target: 5'- cUGcgCGGCcuGCgCGGCGUaggcgucgaguuGCGGCGCGu -3' miRNA: 3'- -ACuaGUCGu-CGaGCCGCG------------CGUCGCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 15586 | 0.66 | 0.386145 |
Target: 5'- cUGAUCGccgaagcugagacGCAGCgcaCGGgcguCGCGCAGCagGCGg -3' miRNA: 3'- -ACUAGU-------------CGUCGa--GCC----GCGCGUCG--CGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 15544 | 0.66 | 0.352323 |
Target: 5'- cGcgCGGcCAGCUCGaacGCGUcuuGguGCGCGg -3' miRNA: 3'- aCuaGUC-GUCGAGC---CGCG---CguCGCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 29375 | 0.66 | 0.396063 |
Target: 5'- cGAgCGGCAuGCccUCGGCccaugccgGCGCGGuCGCGa -3' miRNA: 3'- aCUaGUCGU-CG--AGCCG--------CGCGUC-GCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 40115 | 0.66 | 0.396063 |
Target: 5'- cGAgccgCAGgacgccuaCAGCgugCGGUGCGCGcuGCGCGc -3' miRNA: 3'- aCUa---GUC--------GUCGa--GCCGCGCGU--CGCGC- -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 5406 | 0.66 | 0.396063 |
Target: 5'- gUGAacCGGCGGg-CGGCGcCGCAGCGa- -3' miRNA: 3'- -ACUa-GUCGUCgaGCCGC-GCGUCGCgc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 38086 | 0.66 | 0.396063 |
Target: 5'- uUGGUCAGU-GCUCGuCGCGCuugccGUGCu -3' miRNA: 3'- -ACUAGUCGuCGAGCcGCGCGu----CGCGc -5' |
|||||||
28126 | 3' | -60 | NC_005887.1 | + | 37430 | 0.66 | 0.396063 |
Target: 5'- ---cCAGguGCggagUGGaGCGCGGCGCu -3' miRNA: 3'- acuaGUCguCGa---GCCgCGCGUCGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home