miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 14380 0.75 0.093024
Target:  5'- cGAgucGCcGCUCGGCGCGC-GCGCGu -3'
miRNA:   3'- aCUaguCGuCGAGCCGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 14642 0.72 0.145654
Target:  5'- ---aCGGCAGC-CGGCGCGguGCuGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGCGCguCG-CGc -5'
28126 3' -60 NC_005887.1 + 14691 0.68 0.289714
Target:  5'- cGAUCGggcucgucGCGGCg-GGCGgGCcgGGCGCGg -3'
miRNA:   3'- aCUAGU--------CGUCGagCCGCgCG--UCGCGC- -5'
28126 3' -60 NC_005887.1 + 14951 0.68 0.289714
Target:  5'- ---gUAGCAGCUgGcgcauucugccGCGCGguGCGCGc -3'
miRNA:   3'- acuaGUCGUCGAgC-----------CGCGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 14998 0.69 0.242383
Target:  5'- ---aCGGCAGCgcgCGGCGUGCGucgauCGCGa -3'
miRNA:   3'- acuaGUCGUCGa--GCCGCGCGUc----GCGC- -5'
28126 3' -60 NC_005887.1 + 15042 0.66 0.360792
Target:  5'- cUGcgCGGCcuGCgCGGCGUaggcgucgaguuGCGGCGCGu -3'
miRNA:   3'- -ACuaGUCGu-CGaGCCGCG------------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15463 0.69 0.224153
Target:  5'- cGAUCcGCuGCcCGcGCGCGauCAGCGCGg -3'
miRNA:   3'- aCUAGuCGuCGaGC-CGCGC--GUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15544 0.66 0.352323
Target:  5'- cGcgCGGcCAGCUCGaacGCGUcuuGguGCGCGg -3'
miRNA:   3'- aCuaGUC-GUCGAGC---CGCG---CguCGCGC- -5'
28126 3' -60 NC_005887.1 + 15586 0.66 0.386145
Target:  5'- cUGAUCGccgaagcugagacGCAGCgcaCGGgcguCGCGCAGCagGCGg -3'
miRNA:   3'- -ACUAGU-------------CGUCGa--GCC----GCGCGUCG--CGC- -5'
28126 3' -60 NC_005887.1 + 15633 0.7 0.21834
Target:  5'- cGAUCAGCgaaucgAGCgCGGuCGCGC-GCGCc -3'
miRNA:   3'- aCUAGUCG------UCGaGCC-GCGCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 15692 0.71 0.162542
Target:  5'- cUGAUCGGCgAGCcCGGcCGCcuGCuGCGCGa -3'
miRNA:   3'- -ACUAGUCG-UCGaGCC-GCG--CGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 15735 0.74 0.110229
Target:  5'- cGGUgAGCuggucgAGCUCGGCGCGCaucugcgacacGGCGCc -3'
miRNA:   3'- aCUAgUCG------UCGAGCCGCGCG-----------UCGCGc -5'
28126 3' -60 NC_005887.1 + 15797 0.68 0.261832
Target:  5'- cUGGUCcuGCAGCU-GGCGCGuCAGCuccuucacgccgGCGg -3'
miRNA:   3'- -ACUAGu-CGUCGAgCCGCGC-GUCG------------CGC- -5'
28126 3' -60 NC_005887.1 + 15825 0.67 0.319872
Target:  5'- gGcgCAGguGCagCGcuUGCGCGGCGCGa -3'
miRNA:   3'- aCuaGUCguCGa-GCc-GCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15885 0.81 0.033762
Target:  5'- ---cCAGCAGCUCGGUGCGCucgacGCGCa -3'
miRNA:   3'- acuaGUCGUCGAGCCGCGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 15964 0.69 0.230096
Target:  5'- aGGUCGGcCAGCU--GCGCGUcgAGCGCa -3'
miRNA:   3'- aCUAGUC-GUCGAgcCGCGCG--UCGCGc -5'
28126 3' -60 NC_005887.1 + 16019 0.77 0.058763
Target:  5'- cGA-CAGCGGCgugCGGCGCGUggccGGCGCa -3'
miRNA:   3'- aCUaGUCGUCGa--GCCGCGCG----UCGCGc -5'
28126 3' -60 NC_005887.1 + 16198 0.72 0.141689
Target:  5'- gUGGUUGGCGGggUGGUugcGCGCGGCGCa -3'
miRNA:   3'- -ACUAGUCGUCgaGCCG---CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 16332 0.68 0.297038
Target:  5'- cGAUCuGCugcaucAGCUCGGCGaCGguGCcCGu -3'
miRNA:   3'- aCUAGuCG------UCGAGCCGC-GCguCGcGC- -5'
28126 3' -60 NC_005887.1 + 17019 0.66 0.378152
Target:  5'- aGAgcaAGguGCUUGGCaacggaucggauGCGCAGCgGCa -3'
miRNA:   3'- aCUag-UCguCGAGCCG------------CGCGUCG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.