miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 27559 0.68 0.261832
Target:  5'- aUGGUguGCAGCacgcagCGGaaguacaGCGCgAGCGCGc -3'
miRNA:   3'- -ACUAguCGUCGa-----GCCg------CGCG-UCGCGC- -5'
28126 3' -60 NC_005887.1 + 27670 0.66 0.37727
Target:  5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3'
miRNA:   3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5'
28126 3' -60 NC_005887.1 + 27716 0.67 0.304506
Target:  5'- cGcgCGGCAGCUCaGCGCGCAc---- -3'
miRNA:   3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5'
28126 3' -60 NC_005887.1 + 28203 0.68 0.289714
Target:  5'- cGcAUCAGCGccgcgcGuCUCGGCGguuuugaGCAGCGCGc -3'
miRNA:   3'- aC-UAGUCGU------C-GAGCCGCg------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 28281 0.68 0.268591
Target:  5'- -cAUCGGCAcGC-CGagcGCGCGCAGCGUc -3'
miRNA:   3'- acUAGUCGU-CGaGC---CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 28400 0.7 0.212656
Target:  5'- cGAUCAcgcgcacgucGCAGC-CGaGCGCGCgcaGGCGCu -3'
miRNA:   3'- aCUAGU----------CGUCGaGC-CGCGCG---UCGCGc -5'
28126 3' -60 NC_005887.1 + 28603 0.79 0.043936
Target:  5'- --uUCAGCAGCcCGGCGCGCgugAGCGUGc -3'
miRNA:   3'- acuAGUCGUCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 29375 0.66 0.396063
Target:  5'- cGAgCGGCAuGCccUCGGCccaugccgGCGCGGuCGCGa -3'
miRNA:   3'- aCUaGUCGU-CG--AGCCG--------CGCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 29802 0.67 0.343996
Target:  5'- gGGcCAGUAGCUgGaagucugcggguGUGCGCGGCGCc -3'
miRNA:   3'- aCUaGUCGUCGAgC------------CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 29817 0.74 0.103892
Target:  5'- cGAUCAGCucGC-CGGgcaagaccgugcaCGCGCGGCGCGu -3'
miRNA:   3'- aCUAGUCGu-CGaGCC-------------GCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 30038 0.66 0.378151
Target:  5'- cGA-CAGCAuccGCgCGGCGguguuCGCGGCGCu -3'
miRNA:   3'- aCUaGUCGU---CGaGCCGC-----GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 30688 0.66 0.396063
Target:  5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3'
miRNA:   3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 30713 0.7 0.19118
Target:  5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3'
miRNA:   3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 30757 0.72 0.14972
Target:  5'- -cGUCGGuCAGCUCGaccguGCGCGCGGCGa- -3'
miRNA:   3'- acUAGUC-GUCGAGC-----CGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 31376 0.74 0.110229
Target:  5'- aUGAUCucgacGC-GCUCGGCGUaGCGGUGCGu -3'
miRNA:   3'- -ACUAGu----CGuCGAGCCGCG-CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 31478 0.68 0.292627
Target:  5'- -cGUCAGCacAGUUCGuagucaccgauugccGCGCGCgcGGCGCGg -3'
miRNA:   3'- acUAGUCG--UCGAGC---------------CGCGCG--UCGCGC- -5'
28126 3' -60 NC_005887.1 + 31701 0.68 0.275491
Target:  5'- -cGUCGGCAGaacCUCGgacGCGUGCGGCGUu -3'
miRNA:   3'- acUAGUCGUC---GAGC---CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 32296 0.71 0.167031
Target:  5'- cGAUCgucgGGcCAGC-CGGCGCGCcgcAGUGCGu -3'
miRNA:   3'- aCUAG----UC-GUCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 32645 0.68 0.2963
Target:  5'- gUGAUCGaccguguGCAGCUcacCGGUgucGCGCGuGCGCGc -3'
miRNA:   3'- -ACUAGU-------CGUCGA---GCCG---CGCGU-CGCGC- -5'
28126 3' -60 NC_005887.1 + 32741 0.71 0.176345
Target:  5'- aGcgCGGC-GCUCGcGUGCGCgccGGCGCGc -3'
miRNA:   3'- aCuaGUCGuCGAGC-CGCGCG---UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.