Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 35397 | 0.72 | 0.153888 |
Target: 5'- gUGGcCGGCcGCcgCGGCGCGCGGCaGUGg -3' miRNA: 3'- -ACUaGUCGuCGa-GCCGCGCGUCG-CGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 35216 | 0.69 | 0.236173 |
Target: 5'- uUGcgCAGCAGCuugUCGGCcuGCGUGGgGCu -3' miRNA: 3'- -ACuaGUCGUCG---AGCCG--CGCGUCgCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 34691 | 0.75 | 0.09276 |
Target: 5'- cGAgCAGCAGCgggCGGCcgucgucgcgcuuGCGguGCGCGg -3' miRNA: 3'- aCUaGUCGUCGa--GCCG-------------CGCguCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 33944 | 0.66 | 0.378152 |
Target: 5'- cGA-CGGC-GCUCGGCgagcacgucgcGUGCGGCGUc -3' miRNA: 3'- aCUaGUCGuCGAGCCG-----------CGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 33745 | 0.74 | 0.114653 |
Target: 5'- gGAUCAGCGcGC-CGGCcuucacgagcaucugGCGCGGCGUGc -3' miRNA: 3'- aCUAGUCGU-CGaGCCG---------------CGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32828 | 0.7 | 0.212656 |
Target: 5'- cGAgcCGGCuGCaUGGCGCGCgccGGCGCGc -3' miRNA: 3'- aCUa-GUCGuCGaGCCGCGCG---UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32776 | 0.66 | 0.369402 |
Target: 5'- ---gCAGcCGGCUCGuGCGCaggauCGGCGCGc -3' miRNA: 3'- acuaGUC-GUCGAGC-CGCGc----GUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32741 | 0.71 | 0.176345 |
Target: 5'- aGcgCGGC-GCUCGcGUGCGCgccGGCGCGc -3' miRNA: 3'- aCuaGUCGuCGAGC-CGCGCG---UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32645 | 0.68 | 0.2963 |
Target: 5'- gUGAUCGaccguguGCAGCUcacCGGUgucGCGCGuGCGCGc -3' miRNA: 3'- -ACUAGU-------CGUCGA---GCCG---CGCGU-CGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32296 | 0.71 | 0.167031 |
Target: 5'- cGAUCgucgGGcCAGC-CGGCGCGCcgcAGUGCGu -3' miRNA: 3'- aCUAG----UC-GUCGaGCCGCGCG---UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 31701 | 0.68 | 0.275491 |
Target: 5'- -cGUCGGCAGaacCUCGgacGCGUGCGGCGUu -3' miRNA: 3'- acUAGUCGUC---GAGC---CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 31478 | 0.68 | 0.292627 |
Target: 5'- -cGUCAGCacAGUUCGuagucaccgauugccGCGCGCgcGGCGCGg -3' miRNA: 3'- acUAGUCG--UCGAGC---------------CGCGCG--UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 31376 | 0.74 | 0.110229 |
Target: 5'- aUGAUCucgacGC-GCUCGGCGUaGCGGUGCGu -3' miRNA: 3'- -ACUAGu----CGuCGAGCCGCG-CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30757 | 0.72 | 0.14972 |
Target: 5'- -cGUCGGuCAGCUCGaccguGCGCGCGGCGa- -3' miRNA: 3'- acUAGUC-GUCGAGC-----CGCGCGUCGCgc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30713 | 0.7 | 0.19118 |
Target: 5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3' miRNA: 3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30688 | 0.66 | 0.396063 |
Target: 5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3' miRNA: 3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30038 | 0.66 | 0.378151 |
Target: 5'- cGA-CAGCAuccGCgCGGCGguguuCGCGGCGCu -3' miRNA: 3'- aCUaGUCGU---CGaGCCGC-----GCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 29817 | 0.74 | 0.103892 |
Target: 5'- cGAUCAGCucGC-CGGgcaagaccgugcaCGCGCGGCGCGu -3' miRNA: 3'- aCUAGUCGu-CGaGCC-------------GCGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 29802 | 0.67 | 0.343996 |
Target: 5'- gGGcCAGUAGCUgGaagucugcggguGUGCGCGGCGCc -3' miRNA: 3'- aCUaGUCGUCGAgC------------CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 29375 | 0.66 | 0.396063 |
Target: 5'- cGAgCGGCAuGCccUCGGCccaugccgGCGCGGuCGCGa -3' miRNA: 3'- aCUaGUCGU-CG--AGCCG--------CGCGUC-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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