miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 28603 0.79 0.043936
Target:  5'- --uUCAGCAGCcCGGCGCGCgugAGCGUGc -3'
miRNA:   3'- acuAGUCGUCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 28400 0.7 0.212656
Target:  5'- cGAUCAcgcgcacgucGCAGC-CGaGCGCGCgcaGGCGCu -3'
miRNA:   3'- aCUAGU----------CGUCGaGC-CGCGCG---UCGCGc -5'
28126 3' -60 NC_005887.1 + 28281 0.68 0.268591
Target:  5'- -cAUCGGCAcGC-CGagcGCGCGCAGCGUc -3'
miRNA:   3'- acUAGUCGU-CGaGC---CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 28203 0.68 0.289714
Target:  5'- cGcAUCAGCGccgcgcGuCUCGGCGguuuugaGCAGCGCGc -3'
miRNA:   3'- aC-UAGUCGU------C-GAGCCGCg------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 27716 0.67 0.304506
Target:  5'- cGcgCGGCAGCUCaGCGCGCAc---- -3'
miRNA:   3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5'
28126 3' -60 NC_005887.1 + 27670 0.66 0.37727
Target:  5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3'
miRNA:   3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5'
28126 3' -60 NC_005887.1 + 27559 0.68 0.261832
Target:  5'- aUGGUguGCAGCacgcagCGGaaguacaGCGCgAGCGCGc -3'
miRNA:   3'- -ACUAguCGUCGa-----GCCg------CGCG-UCGCGC- -5'
28126 3' -60 NC_005887.1 + 27107 0.69 0.248729
Target:  5'- cGggCGGCAGCgugcgCGGuCGCGCGcucgccgagguuGCGCa -3'
miRNA:   3'- aCuaGUCGUCGa----GCC-GCGCGU------------CGCGc -5'
28126 3' -60 NC_005887.1 + 26960 0.67 0.335812
Target:  5'- aGAUCcugcaGGCcGUUCGGCGaCGguGUGCc -3'
miRNA:   3'- aCUAG-----UCGuCGAGCCGC-GCguCGCGc -5'
28126 3' -60 NC_005887.1 + 26503 0.7 0.20167
Target:  5'- gGAUCucgcGCGGCUgCaGCGCGCGuucccGCGCGg -3'
miRNA:   3'- aCUAGu---CGUCGA-GcCGCGCGU-----CGCGC- -5'
28126 3' -60 NC_005887.1 + 26072 0.73 0.134055
Target:  5'- cUGGUCAGC-GCgucagCGGCccGCGCGGCGUu -3'
miRNA:   3'- -ACUAGUCGuCGa----GCCG--CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 25495 0.73 0.130381
Target:  5'- ---gCGGCGGCUCGGacgaugGCGCGGCGgGu -3'
miRNA:   3'- acuaGUCGUCGAGCCg-----CGCGUCGCgC- -5'
28126 3' -60 NC_005887.1 + 24923 0.67 0.312117
Target:  5'- gGAUCGGCAccguugucgaucGCgacgCGuGCGCGCGggccgccuugcGCGCGg -3'
miRNA:   3'- aCUAGUCGU------------CGa---GC-CGCGCGU-----------CGCGC- -5'
28126 3' -60 NC_005887.1 + 24256 0.66 0.352324
Target:  5'- cGG-CAGCAGCcaCGGCGaguCGCcggauAGCGCGa -3'
miRNA:   3'- aCUaGUCGUCGa-GCCGC---GCG-----UCGCGC- -5'
28126 3' -60 NC_005887.1 + 23970 0.69 0.230097
Target:  5'- cGAccUCGGCccacuGCUCGaGCGCgagGCGGCGCu -3'
miRNA:   3'- aCU--AGUCGu----CGAGC-CGCG---CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 23505 0.7 0.21834
Target:  5'- gGAagCGGCGGgaUGGCGgGCGGCuGCGa -3'
miRNA:   3'- aCUa-GUCGUCgaGCCGCgCGUCG-CGC- -5'
28126 3' -60 NC_005887.1 + 23472 0.68 0.275491
Target:  5'- cUGAUCGacgcGCuGCUgCGGCuGCcagcgGCAGCGCGa -3'
miRNA:   3'- -ACUAGU----CGuCGA-GCCG-CG-----CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 23243 0.78 0.052325
Target:  5'- cGAgCGGCGGCggUCGGCGCGCaaaaGGCGCa -3'
miRNA:   3'- aCUaGUCGUCG--AGCCGCGCG----UCGCGc -5'
28126 3' -60 NC_005887.1 + 23049 0.69 0.255211
Target:  5'- cGAUCAGCGGCaacgCGccaugcuCGCGCAGCuGCc -3'
miRNA:   3'- aCUAGUCGUCGa---GCc------GCGCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 22253 0.76 0.071918
Target:  5'- cGAUCAGCGaCggUGGCGCGCAGCagGCGa -3'
miRNA:   3'- aCUAGUCGUcGa-GCCGCGCGUCG--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.