Results 61 - 80 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 21580 | 0.67 | 0.312117 |
Target: 5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3' miRNA: 3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 21384 | 0.67 | 0.335811 |
Target: 5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3' miRNA: 3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 19182 | 0.67 | 0.335812 |
Target: 5'- -cGUgAGCGGCgcgGGCGUggagacagGCGGCGCGg -3' miRNA: 3'- acUAgUCGUCGag-CCGCG--------CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 18486 | 0.74 | 0.110229 |
Target: 5'- cGAUCAGCGucguGCUgacgaCGGCGcCGCGGCGUa -3' miRNA: 3'- aCUAGUCGU----CGA-----GCCGC-GCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 18100 | 0.71 | 0.186117 |
Target: 5'- -cGUCGGCcgucAGUcCGGCGCGCguaAGCGCGc -3' miRNA: 3'- acUAGUCG----UCGaGCCGCGCG---UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 17713 | 0.67 | 0.312117 |
Target: 5'- gGAUCGugcccuGCAGCUucaCGGCGCugaccgucgugcGCAGCGUu -3' miRNA: 3'- aCUAGU------CGUCGA---GCCGCG------------CGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 17359 | 0.68 | 0.275491 |
Target: 5'- cGAacCGGC-GUUUGcGCGCGCGGCGCc -3' miRNA: 3'- aCUa-GUCGuCGAGC-CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 17019 | 0.66 | 0.378152 |
Target: 5'- aGAgcaAGguGCUUGGCaacggaucggauGCGCAGCgGCa -3' miRNA: 3'- aCUag-UCguCGAGCCG------------CGCGUCG-CGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 16332 | 0.68 | 0.297038 |
Target: 5'- cGAUCuGCugcaucAGCUCGGCGaCGguGCcCGu -3' miRNA: 3'- aCUAGuCG------UCGAGCCGC-GCguCGcGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 16198 | 0.72 | 0.141689 |
Target: 5'- gUGGUUGGCGGggUGGUugcGCGCGGCGCa -3' miRNA: 3'- -ACUAGUCGUCgaGCCG---CGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 16019 | 0.77 | 0.058763 |
Target: 5'- cGA-CAGCGGCgugCGGCGCGUggccGGCGCa -3' miRNA: 3'- aCUaGUCGUCGa--GCCGCGCG----UCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15964 | 0.69 | 0.230096 |
Target: 5'- aGGUCGGcCAGCU--GCGCGUcgAGCGCa -3' miRNA: 3'- aCUAGUC-GUCGAgcCGCGCG--UCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15885 | 0.81 | 0.033762 |
Target: 5'- ---cCAGCAGCUCGGUGCGCucgacGCGCa -3' miRNA: 3'- acuaGUCGUCGAGCCGCGCGu----CGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15825 | 0.67 | 0.319872 |
Target: 5'- gGcgCAGguGCagCGcuUGCGCGGCGCGa -3' miRNA: 3'- aCuaGUCguCGa-GCc-GCGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15797 | 0.68 | 0.261832 |
Target: 5'- cUGGUCcuGCAGCU-GGCGCGuCAGCuccuucacgccgGCGg -3' miRNA: 3'- -ACUAGu-CGUCGAgCCGCGC-GUCG------------CGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15735 | 0.74 | 0.110229 |
Target: 5'- cGGUgAGCuggucgAGCUCGGCGCGCaucugcgacacGGCGCc -3' miRNA: 3'- aCUAgUCG------UCGAGCCGCGCG-----------UCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15692 | 0.71 | 0.162542 |
Target: 5'- cUGAUCGGCgAGCcCGGcCGCcuGCuGCGCGa -3' miRNA: 3'- -ACUAGUCG-UCGaGCC-GCG--CGuCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15633 | 0.7 | 0.21834 |
Target: 5'- cGAUCAGCgaaucgAGCgCGGuCGCGC-GCGCc -3' miRNA: 3'- aCUAGUCG------UCGaGCC-GCGCGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15586 | 0.66 | 0.386145 |
Target: 5'- cUGAUCGccgaagcugagacGCAGCgcaCGGgcguCGCGCAGCagGCGg -3' miRNA: 3'- -ACUAGU-------------CGUCGa--GCC----GCGCGUCG--CGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15544 | 0.66 | 0.352323 |
Target: 5'- cGcgCGGcCAGCUCGaacGCGUcuuGguGCGCGg -3' miRNA: 3'- aCuaGUC-GUCGAGC---CGCG---CguCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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