miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 34691 0.75 0.09276
Target:  5'- cGAgCAGCAGCgggCGGCcgucgucgcgcuuGCGguGCGCGg -3'
miRNA:   3'- aCUaGUCGUCGa--GCCG-------------CGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 22253 0.76 0.071918
Target:  5'- cGAUCAGCGaCggUGGCGCGCAGCagGCGa -3'
miRNA:   3'- aCUAGUCGUcGa-GCCGCGCGUCG--CGC- -5'
28126 3' -60 NC_005887.1 + 41535 0.78 0.055454
Target:  5'- aGAUCcGCGaggcGCUCGGCGCGCA-CGCGa -3'
miRNA:   3'- aCUAGuCGU----CGAGCCGCGCGUcGCGC- -5'
28126 3' -60 NC_005887.1 + 23243 0.78 0.052325
Target:  5'- cGAgCGGCGGCggUCGGCGCGCaaaaGGCGCa -3'
miRNA:   3'- aCUaGUCGUCG--AGCCGCGCG----UCGCGc -5'
28126 3' -60 NC_005887.1 + 15885 0.81 0.033762
Target:  5'- ---cCAGCAGCUCGGUGCGCucgacGCGCa -3'
miRNA:   3'- acuaGUCGUCGAGCCGCGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 14642 0.72 0.145654
Target:  5'- ---aCGGCAGC-CGGCGCGguGCuGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGCGCguCG-CGc -5'
28126 3' -60 NC_005887.1 + 30757 0.72 0.14972
Target:  5'- -cGUCGGuCAGCUCGaccguGCGCGCGGCGa- -3'
miRNA:   3'- acUAGUC-GUCGAGC-----CGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 13448 0.69 0.255212
Target:  5'- cGcUCAGCAcGUUCauccugacgGGCGCGCAGgCGCu -3'
miRNA:   3'- aCuAGUCGU-CGAG---------CCGCGCGUC-GCGc -5'
28126 3' -60 NC_005887.1 + 11368 0.69 0.242383
Target:  5'- cUGAUCAGC-GCg-GGCGU-CAGCGCa -3'
miRNA:   3'- -ACUAGUCGuCGagCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 40512 0.69 0.242383
Target:  5'- gUGuUCGGCAuccaccacgCGGCGCGCGGCaGCGa -3'
miRNA:   3'- -ACuAGUCGUcga------GCCGCGCGUCG-CGC- -5'
28126 3' -60 NC_005887.1 + 1466 0.69 0.236173
Target:  5'- cGAgCAGgAGCccgacgccgaCGGCGUGCGGCGCu -3'
miRNA:   3'- aCUaGUCgUCGa---------GCCGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 35216 0.69 0.236173
Target:  5'- uUGcgCAGCAGCuugUCGGCcuGCGUGGgGCu -3'
miRNA:   3'- -ACuaGUCGUCG---AGCCG--CGCGUCgCGc -5'
28126 3' -60 NC_005887.1 + 23970 0.69 0.230097
Target:  5'- cGAccUCGGCccacuGCUCGaGCGCgagGCGGCGCu -3'
miRNA:   3'- aCU--AGUCGu----CGAGC-CGCG---CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 28400 0.7 0.212656
Target:  5'- cGAUCAcgcgcacgucGCAGC-CGaGCGCGCgcaGGCGCu -3'
miRNA:   3'- aCUAGU----------CGUCGaGC-CGCGCG---UCGCGc -5'
28126 3' -60 NC_005887.1 + 4436 0.7 0.212656
Target:  5'- aUGGUugCAGCAGCUCGGCaucgucuCGCAGUuCGa -3'
miRNA:   3'- -ACUA--GUCGUCGAGCCGc------GCGUCGcGC- -5'
28126 3' -60 NC_005887.1 + 41951 0.7 0.2071
Target:  5'- ---cCGGCGuGCUCGcguggugcGUGCGCGGCGCGc -3'
miRNA:   3'- acuaGUCGU-CGAGC--------CGCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 35715 0.7 0.20167
Target:  5'- aGAUCcacgcguGCAGCUCGGU-CGCGGuCGUGg -3'
miRNA:   3'- aCUAGu------CGUCGAGCCGcGCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 30713 0.7 0.19118
Target:  5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3'
miRNA:   3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 32741 0.71 0.176345
Target:  5'- aGcgCGGC-GCUCGcGUGCGCgccGGCGCGc -3'
miRNA:   3'- aCuaGUCGuCGAGC-CGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 32296 0.71 0.167031
Target:  5'- cGAUCgucgGGcCAGC-CGGCGCGCcgcAGUGCGu -3'
miRNA:   3'- aCUAG----UC-GUCGaGCCGCGCG---UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.