miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 41951 0.7 0.2071
Target:  5'- ---cCGGCGuGCUCGcguggugcGUGCGCGGCGCGc -3'
miRNA:   3'- acuaGUCGU-CGAGC--------CGCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 4436 0.7 0.212656
Target:  5'- aUGGUugCAGCAGCUCGGCaucgucuCGCAGUuCGa -3'
miRNA:   3'- -ACUA--GUCGUCGAGCCGc------GCGUCGcGC- -5'
28126 3' -60 NC_005887.1 + 28400 0.7 0.212656
Target:  5'- cGAUCAcgcgcacgucGCAGC-CGaGCGCGCgcaGGCGCu -3'
miRNA:   3'- aCUAGU----------CGUCGaGC-CGCGCG---UCGCGc -5'
28126 3' -60 NC_005887.1 + 21384 0.67 0.335811
Target:  5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3'
miRNA:   3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5'
28126 3' -60 NC_005887.1 + 753 0.67 0.32777
Target:  5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3'
miRNA:   3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 3009 0.67 0.312117
Target:  5'- aUGGUC-GCGGC--GGUGcCGCGGCGCu -3'
miRNA:   3'- -ACUAGuCGUCGagCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 17713 0.67 0.312117
Target:  5'- gGAUCGugcccuGCAGCUucaCGGCGCugaccgucgugcGCAGCGUu -3'
miRNA:   3'- aCUAGU------CGUCGA---GCCGCG------------CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 21580 0.67 0.312117
Target:  5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 14310 0.67 0.305261
Target:  5'- aGAcCGGCGGCaagaUCGGaugccgcgccgaacaGCGCGGCGCc -3'
miRNA:   3'- aCUaGUCGUCG----AGCCg--------------CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 12823 0.67 0.304506
Target:  5'- cGA-CGGCGGUguucUCGcGUugcaGCGCGGCGCGa -3'
miRNA:   3'- aCUaGUCGUCG----AGC-CG----CGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15544 0.66 0.352323
Target:  5'- cGcgCGGcCAGCUCGaacGCGUcuuGguGCGCGg -3'
miRNA:   3'- aCuaGUC-GUCGAGC---CGCG---CguCGCGC- -5'
28126 3' -60 NC_005887.1 + 15042 0.66 0.360792
Target:  5'- cUGcgCGGCcuGCgCGGCGUaggcgucgaguuGCGGCGCGu -3'
miRNA:   3'- -ACuaGUCGu-CGaGCCGCG------------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 27670 0.66 0.37727
Target:  5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3'
miRNA:   3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5'
28126 3' -60 NC_005887.1 + 30038 0.66 0.378151
Target:  5'- cGA-CAGCAuccGCgCGGCGguguuCGCGGCGCu -3'
miRNA:   3'- aCUaGUCGU---CGaGCCGC-----GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 12089 0.66 0.378151
Target:  5'- cGA-CGGUuGCgagCGGCGUGCGuGCGCc -3'
miRNA:   3'- aCUaGUCGuCGa--GCCGCGCGU-CGCGc -5'
28126 3' -60 NC_005887.1 + 3152 0.66 0.387039
Target:  5'- --uUCAuGCGGCcguggUCGGCGUuCAGCGCc -3'
miRNA:   3'- acuAGU-CGUCG-----AGCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 11809 0.66 0.387039
Target:  5'- gUGAUCAuGCuGUugcgugcauUCGuGCGCGCcguGCGCGc -3'
miRNA:   3'- -ACUAGU-CGuCG---------AGC-CGCGCGu--CGCGC- -5'
28126 3' -60 NC_005887.1 + 10384 0.66 0.387039
Target:  5'- cGAUU-GCGGCUCGucauCcUGCAGCGCGg -3'
miRNA:   3'- aCUAGuCGUCGAGCc---GcGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 30688 0.66 0.396063
Target:  5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3'
miRNA:   3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 40227 0.81 0.03416
Target:  5'- -cGUCGcGCAGCUcacacgcggcgagcgCGGCGCGCAGCGCGc -3'
miRNA:   3'- acUAGU-CGUCGA---------------GCCGCGCGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.