Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 2982 | 0.69 | 0.248729 |
Target: 5'- -----cGCAGCUUGGCG-GCGGCGUc -3' miRNA: 3'- acuaguCGUCGAGCCGCgCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 9919 | 0.68 | 0.297038 |
Target: 5'- cGAUguGCGGCgcgCGGCGUucagguugGCcGCGCu -3' miRNA: 3'- aCUAguCGUCGa--GCCGCG--------CGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 16332 | 0.68 | 0.297038 |
Target: 5'- cGAUCuGCugcaucAGCUCGGCGaCGguGCcCGu -3' miRNA: 3'- aCUAGuCG------UCGAGCCGC-GCguCGcGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30688 | 0.66 | 0.396063 |
Target: 5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3' miRNA: 3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 10384 | 0.66 | 0.387039 |
Target: 5'- cGAUU-GCGGCUCGucauCcUGCAGCGCGg -3' miRNA: 3'- aCUAGuCGUCGAGCc---GcGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 11809 | 0.66 | 0.387039 |
Target: 5'- gUGAUCAuGCuGUugcgugcauUCGuGCGCGCcguGCGCGc -3' miRNA: 3'- -ACUAGU-CGuCG---------AGC-CGCGCGu--CGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 3152 | 0.66 | 0.387039 |
Target: 5'- --uUCAuGCGGCcguggUCGGCGUuCAGCGCc -3' miRNA: 3'- acuAGU-CGUCG-----AGCCGCGcGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 12089 | 0.66 | 0.378151 |
Target: 5'- cGA-CGGUuGCgagCGGCGUGCGuGCGCc -3' miRNA: 3'- aCUaGUCGuCGa--GCCGCGCGU-CGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30038 | 0.66 | 0.378151 |
Target: 5'- cGA-CAGCAuccGCgCGGCGguguuCGCGGCGCu -3' miRNA: 3'- aCUaGUCGU---CGaGCCGC-----GCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 27670 | 0.66 | 0.37727 |
Target: 5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3' miRNA: 3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15042 | 0.66 | 0.360792 |
Target: 5'- cUGcgCGGCcuGCgCGGCGUaggcgucgaguuGCGGCGCGu -3' miRNA: 3'- -ACuaGUCGu-CGaGCCGCG------------CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15544 | 0.66 | 0.352323 |
Target: 5'- cGcgCGGcCAGCUCGaacGCGUcuuGguGCGCGg -3' miRNA: 3'- aCuaGUC-GUCGAGC---CGCG---CguCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 21384 | 0.67 | 0.335811 |
Target: 5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3' miRNA: 3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 753 | 0.67 | 0.32777 |
Target: 5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3' miRNA: 3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 3009 | 0.67 | 0.312117 |
Target: 5'- aUGGUC-GCGGC--GGUGcCGCGGCGCu -3' miRNA: 3'- -ACUAGuCGUCGagCCGC-GCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 17713 | 0.67 | 0.312117 |
Target: 5'- gGAUCGugcccuGCAGCUucaCGGCGCugaccgucgugcGCAGCGUu -3' miRNA: 3'- aCUAGU------CGUCGA---GCCGCG------------CGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 21580 | 0.67 | 0.312117 |
Target: 5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3' miRNA: 3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 14310 | 0.67 | 0.305261 |
Target: 5'- aGAcCGGCGGCaagaUCGGaugccgcgccgaacaGCGCGGCGCc -3' miRNA: 3'- aCUaGUCGUCG----AGCCg--------------CGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 12823 | 0.67 | 0.304506 |
Target: 5'- cGA-CGGCGGUguucUCGcGUugcaGCGCGGCGCGa -3' miRNA: 3'- aCUaGUCGUCG----AGC-CG----CGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 27716 | 0.67 | 0.304506 |
Target: 5'- cGcgCGGCAGCUCaGCGCGCAc---- -3' miRNA: 3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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