miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 14951 0.68 0.289714
Target:  5'- ---gUAGCAGCUgGcgcauucugccGCGCGguGCGCGc -3'
miRNA:   3'- acuaGUCGUCGAgC-----------CGCGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 9919 0.68 0.297038
Target:  5'- cGAUguGCGGCgcgCGGCGUucagguugGCcGCGCu -3'
miRNA:   3'- aCUAguCGUCGa--GCCGCG--------CGuCGCGc -5'
28126 3' -60 NC_005887.1 + 21384 0.67 0.335811
Target:  5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3'
miRNA:   3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5'
28126 3' -60 NC_005887.1 + 11809 0.66 0.387039
Target:  5'- gUGAUCAuGCuGUugcgugcauUCGuGCGCGCcguGCGCGc -3'
miRNA:   3'- -ACUAGU-CGuCG---------AGC-CGCGCGu--CGCGC- -5'
28126 3' -60 NC_005887.1 + 15964 0.69 0.230096
Target:  5'- aGGUCGGcCAGCU--GCGCGUcgAGCGCa -3'
miRNA:   3'- aCUAGUC-GUCGAgcCGCGCG--UCGCGc -5'
28126 3' -60 NC_005887.1 + 15797 0.68 0.261832
Target:  5'- cUGGUCcuGCAGCU-GGCGCGuCAGCuccuucacgccgGCGg -3'
miRNA:   3'- -ACUAGu-CGUCGAgCCGCGC-GUCG------------CGC- -5'
28126 3' -60 NC_005887.1 + 27716 0.67 0.304506
Target:  5'- cGcgCGGCAGCUCaGCGCGCAc---- -3'
miRNA:   3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5'
28126 3' -60 NC_005887.1 + 10384 0.66 0.387039
Target:  5'- cGAUU-GCGGCUCGucauCcUGCAGCGCGg -3'
miRNA:   3'- aCUAGuCGUCGAGCc---GcGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 3341 0.68 0.261832
Target:  5'- gUGAUCAuggaauccaucGCGGCgacgaaGuuGCGCAGCGCGa -3'
miRNA:   3'- -ACUAGU-----------CGUCGag----CcgCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 30688 0.66 0.396063
Target:  5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3'
miRNA:   3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 16332 0.68 0.297038
Target:  5'- cGAUCuGCugcaucAGCUCGGCGaCGguGCcCGu -3'
miRNA:   3'- aCUAGuCG------UCGAGCCGC-GCguCGcGC- -5'
28126 3' -60 NC_005887.1 + 40763 0.68 0.281821
Target:  5'- cGAUCGGCuccugccAGC-CGuGCGCGC-GCGCc -3'
miRNA:   3'- aCUAGUCG-------UCGaGC-CGCGCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 21580 0.67 0.312117
Target:  5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 753 0.67 0.32777
Target:  5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3'
miRNA:   3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 27670 0.66 0.37727
Target:  5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3'
miRNA:   3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5'
28126 3' -60 NC_005887.1 + 3152 0.66 0.387039
Target:  5'- --uUCAuGCGGCcguggUCGGCGUuCAGCGCc -3'
miRNA:   3'- acuAGU-CGUCG-----AGCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 23505 0.7 0.21834
Target:  5'- gGAagCGGCGGgaUGGCGgGCGGCuGCGa -3'
miRNA:   3'- aCUa-GUCGUCgaGCCGCgCGUCG-CGC- -5'
28126 3' -60 NC_005887.1 + 41234 0.69 0.228299
Target:  5'- gGAUCAuguucgacaccauuGCGGCUuucUGGCaCGCGGCGCa -3'
miRNA:   3'- aCUAGU--------------CGUCGA---GCCGcGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 27107 0.69 0.248729
Target:  5'- cGggCGGCAGCgugcgCGGuCGCGCGcucgccgagguuGCGCa -3'
miRNA:   3'- aCuaGUCGUCGa----GCC-GCGCGU------------CGCGc -5'
28126 3' -60 NC_005887.1 + 1757 0.68 0.261832
Target:  5'- cGcgCAGCuugcgcucguGCUCGGgGCGaucgAGCGCGa -3'
miRNA:   3'- aCuaGUCGu---------CGAGCCgCGCg---UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.