miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 4695 0.69 0.230096
Target:  5'- uUGAUCgcgccGGCGGCcacCGGCGCcGCGGCGa- -3'
miRNA:   3'- -ACUAG-----UCGUCGa--GCCGCG-CGUCGCgc -5'
28126 3' -60 NC_005887.1 + 27716 0.67 0.304506
Target:  5'- cGcgCGGCAGCUCaGCGCGCAc---- -3'
miRNA:   3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5'
28126 3' -60 NC_005887.1 + 10384 0.66 0.387039
Target:  5'- cGAUU-GCGGCUCGucauCcUGCAGCGCGg -3'
miRNA:   3'- aCUAGuCGUCGAGCc---GcGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 14998 0.69 0.242383
Target:  5'- ---aCGGCAGCgcgCGGCGUGCGucgauCGCGa -3'
miRNA:   3'- acuaGUCGUCGa--GCCGCGCGUc----GCGC- -5'
28126 3' -60 NC_005887.1 + 30688 0.66 0.396063
Target:  5'- cGAUcCGGaucuGC-CGGaCGCGCuGCGCGa -3'
miRNA:   3'- aCUA-GUCgu--CGaGCC-GCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 18486 0.74 0.110229
Target:  5'- cGAUCAGCGucguGCUgacgaCGGCGcCGCGGCGUa -3'
miRNA:   3'- aCUAGUCGU----CGA-----GCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 3152 0.66 0.387039
Target:  5'- --uUCAuGCGGCcguggUCGGCGUuCAGCGCc -3'
miRNA:   3'- acuAGU-CGUCG-----AGCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 16198 0.72 0.141689
Target:  5'- gUGGUUGGCGGggUGGUugcGCGCGGCGCa -3'
miRNA:   3'- -ACUAGUCGUCgaGCCG---CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 41010 0.71 0.162542
Target:  5'- cGGUCgAGCAugcGCUCGGCGUugccgaacucGguGCGCGc -3'
miRNA:   3'- aCUAG-UCGU---CGAGCCGCG----------CguCGCGC- -5'
28126 3' -60 NC_005887.1 + 18100 0.71 0.186117
Target:  5'- -cGUCGGCcgucAGUcCGGCGCGCguaAGCGCGc -3'
miRNA:   3'- acUAGUCG----UCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 26503 0.7 0.20167
Target:  5'- gGAUCucgcGCGGCUgCaGCGCGCGuucccGCGCGg -3'
miRNA:   3'- aCUAGu---CGUCGA-GcCGCGCGU-----CGCGC- -5'
28126 3' -60 NC_005887.1 + 23505 0.7 0.21834
Target:  5'- gGAagCGGCGGgaUGGCGgGCGGCuGCGa -3'
miRNA:   3'- aCUa-GUCGUCgaGCCGCgCGUCG-CGC- -5'
28126 3' -60 NC_005887.1 + 41234 0.69 0.228299
Target:  5'- gGAUCAuguucgacaccauuGCGGCUuucUGGCaCGCGGCGCa -3'
miRNA:   3'- aCUAGU--------------CGUCGA---GCCGcGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 23049 0.69 0.255211
Target:  5'- cGAUCAGCGGCaacgCGccaugcuCGCGCAGCuGCc -3'
miRNA:   3'- aCUAGUCGUCGa---GCc------GCGCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 3341 0.68 0.261832
Target:  5'- gUGAUCAuggaauccaucGCGGCgacgaaGuuGCGCAGCGCGa -3'
miRNA:   3'- -ACUAGU-----------CGUCGag----CcgCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 14951 0.68 0.289714
Target:  5'- ---gUAGCAGCUgGcgcauucugccGCGCGguGCGCGc -3'
miRNA:   3'- acuaGUCGUCGAgC-----------CGCGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 9919 0.68 0.297038
Target:  5'- cGAUguGCGGCgcgCGGCGUucagguugGCcGCGCu -3'
miRNA:   3'- aCUAguCGUCGa--GCCGCG--------CGuCGCGc -5'
28126 3' -60 NC_005887.1 + 21580 0.67 0.312117
Target:  5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 753 0.67 0.32777
Target:  5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3'
miRNA:   3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 27670 0.66 0.37727
Target:  5'- gGuAUCAGCGccuucgacacgacGCUcgaCGGCGCGCucGCGCu -3'
miRNA:   3'- aC-UAGUCGU-------------CGA---GCCGCGCGu-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.