miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 40763 0.68 0.281821
Target:  5'- cGAUCGGCuccugccAGC-CGuGCGCGC-GCGCc -3'
miRNA:   3'- aCUAGUCG-------UCGaGC-CGCGCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 17359 0.68 0.275491
Target:  5'- cGAacCGGC-GUUUGcGCGCGCGGCGCc -3'
miRNA:   3'- aCUa-GUCGuCGAGC-CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 7447 0.7 0.2071
Target:  5'- -cGUCGGCgAGCUgaacgCGGCGUugucgucggucuGCAGCGCGa -3'
miRNA:   3'- acUAGUCG-UCGA-----GCCGCG------------CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 3341 0.68 0.261832
Target:  5'- gUGAUCAuggaauccaucGCGGCgacgaaGuuGCGCAGCGCGa -3'
miRNA:   3'- -ACUAGU-----------CGUCGag----CcgCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 11368 0.69 0.242383
Target:  5'- cUGAUCAGC-GCg-GGCGU-CAGCGCa -3'
miRNA:   3'- -ACUAGUCGuCGagCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 13448 0.69 0.255212
Target:  5'- cGcUCAGCAcGUUCauccugacgGGCGCGCAGgCGCu -3'
miRNA:   3'- aCuAGUCGU-CGAG---------CCGCGCGUC-GCGc -5'
28126 3' -60 NC_005887.1 + 38086 0.66 0.396063
Target:  5'- uUGGUCAGU-GCUCGuCGCGCuugccGUGCu -3'
miRNA:   3'- -ACUAGUCGuCGAGCcGCGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 13617 0.75 0.093024
Target:  5'- ----uGGCAGCgCGGCGCGCGGCGg- -3'
miRNA:   3'- acuagUCGUCGaGCCGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 28281 0.68 0.268591
Target:  5'- -cAUCGGCAcGC-CGagcGCGCGCAGCGUc -3'
miRNA:   3'- acUAGUCGU-CGaGC---CGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 27559 0.68 0.261832
Target:  5'- aUGGUguGCAGCacgcagCGGaaguacaGCGCgAGCGCGc -3'
miRNA:   3'- -ACUAguCGUCGa-----GCCg------CGCG-UCGCGC- -5'
28126 3' -60 NC_005887.1 + 15586 0.66 0.386145
Target:  5'- cUGAUCGccgaagcugagacGCAGCgcaCGGgcguCGCGCAGCagGCGg -3'
miRNA:   3'- -ACUAGU-------------CGUCGa--GCC----GCGCGUCG--CGC- -5'
28126 3' -60 NC_005887.1 + 815 0.66 0.396063
Target:  5'- cGAUCaacAGCcauGCUCGcGCGauCGCGGcCGCGa -3'
miRNA:   3'- aCUAG---UCGu--CGAGC-CGC--GCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 12075 0.66 0.396063
Target:  5'- aGGUCGGCAcgucGCUCGGUcaggucaccgacGUGCuggccGCGCa -3'
miRNA:   3'- aCUAGUCGU----CGAGCCG------------CGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 37430 0.66 0.396063
Target:  5'- ---cCAGguGCggagUGGaGCGCGGCGCu -3'
miRNA:   3'- acuaGUCguCGa---GCCgCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 40115 0.66 0.396063
Target:  5'- cGAgccgCAGgacgccuaCAGCgugCGGUGCGCGcuGCGCGc -3'
miRNA:   3'- aCUa---GUC--------GUCGa--GCCGCGCGU--CGCGC- -5'
28126 3' -60 NC_005887.1 + 29375 0.66 0.396063
Target:  5'- cGAgCGGCAuGCccUCGGCccaugccgGCGCGGuCGCGa -3'
miRNA:   3'- aCUaGUCGU-CG--AGCCG--------CGCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 41723 0.66 0.396063
Target:  5'- aUGAcgGGCGGCgauccgauccCGGCGCGCGG-GCu -3'
miRNA:   3'- -ACUagUCGUCGa---------GCCGCGCGUCgCGc -5'
28126 3' -60 NC_005887.1 + 41454 0.66 0.378152
Target:  5'- -----cGCuGCUCGGCaCGCcGCGCGa -3'
miRNA:   3'- acuaguCGuCGAGCCGcGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 14642 0.72 0.145654
Target:  5'- ---aCGGCAGC-CGGCGCGguGCuGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGCGCguCG-CGc -5'
28126 3' -60 NC_005887.1 + 7113 0.73 0.134055
Target:  5'- gUGGUCuaacgaGGCGGggCGGCGCuGCGGCGCc -3'
miRNA:   3'- -ACUAG------UCGUCgaGCCGCG-CGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.