Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 32776 | 0.66 | 0.369402 |
Target: 5'- ---gCAGcCGGCUCGuGCGCaggauCGGCGCGc -3' miRNA: 3'- acuaGUC-GUCGAGC-CGCGc----GUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15042 | 0.66 | 0.360792 |
Target: 5'- cUGcgCGGCcuGCgCGGCGUaggcgucgaguuGCGGCGCGu -3' miRNA: 3'- -ACuaGUCGu-CGaGCCGCG------------CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 24256 | 0.66 | 0.352324 |
Target: 5'- cGG-CAGCAGCcaCGGCGaguCGCcggauAGCGCGa -3' miRNA: 3'- aCUaGUCGUCGa-GCCGC---GCG-----UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15544 | 0.66 | 0.352323 |
Target: 5'- cGcgCGGcCAGCUCGaacGCGUcuuGguGCGCGg -3' miRNA: 3'- aCuaGUC-GUCGAGC---CGCG---CguCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 8097 | 0.66 | 0.351485 |
Target: 5'- cGcgCGcGCAGCUCGcCGCGCucgccgaGGCGCc -3' miRNA: 3'- aCuaGU-CGUCGAGCcGCGCG-------UCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 29802 | 0.67 | 0.343996 |
Target: 5'- gGGcCAGUAGCUgGaagucugcggguGUGCGCGGCGCc -3' miRNA: 3'- aCUaGUCGUCGAgC------------CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 19182 | 0.67 | 0.335812 |
Target: 5'- -cGUgAGCGGCgcgGGCGUggagacagGCGGCGCGg -3' miRNA: 3'- acUAgUCGUCGag-CCGCG--------CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 35687 | 0.67 | 0.335812 |
Target: 5'- cGAUCGGCGGC-CGGCuuCGCGGUu-- -3' miRNA: 3'- aCUAGUCGUCGaGCCGc-GCGUCGcgc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 26960 | 0.67 | 0.335812 |
Target: 5'- aGAUCcugcaGGCcGUUCGGCGaCGguGUGCc -3' miRNA: 3'- aCUAG-----UCGuCGAGCCGC-GCguCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 11308 | 0.67 | 0.335812 |
Target: 5'- ---gCGGcCGGCUCGGCaGCG-AGCGCc -3' miRNA: 3'- acuaGUC-GUCGAGCCG-CGCgUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 21384 | 0.67 | 0.335811 |
Target: 5'- cGAU--GCGG-UCGGCGCGguGgGCGu -3' miRNA: 3'- aCUAguCGUCgAGCCGCGCguCgCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 41989 | 0.67 | 0.333384 |
Target: 5'- -uAUCAGCAGCacggccugCGGCccacgucgagugucGcCGCGGCGCGc -3' miRNA: 3'- acUAGUCGUCGa-------GCCG--------------C-GCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 753 | 0.67 | 0.32777 |
Target: 5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3' miRNA: 3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15825 | 0.67 | 0.319872 |
Target: 5'- gGcgCAGguGCagCGcuUGCGCGGCGCGa -3' miRNA: 3'- aCuaGUCguCGa-GCc-GCGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 3009 | 0.67 | 0.312117 |
Target: 5'- aUGGUC-GCGGC--GGUGcCGCGGCGCu -3' miRNA: 3'- -ACUAGuCGUCGagCCGC-GCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 17713 | 0.67 | 0.312117 |
Target: 5'- gGAUCGugcccuGCAGCUucaCGGCGCugaccgucgugcGCAGCGUu -3' miRNA: 3'- aCUAGU------CGUCGA---GCCGCG------------CGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 21580 | 0.67 | 0.312117 |
Target: 5'- ---cCGGCAGC-CGGCGuCGUuGCGCc -3' miRNA: 3'- acuaGUCGUCGaGCCGC-GCGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 24923 | 0.67 | 0.312117 |
Target: 5'- gGAUCGGCAccguugucgaucGCgacgCGuGCGCGCGggccgccuugcGCGCGg -3' miRNA: 3'- aCUAGUCGU------------CGa---GC-CGCGCGU-----------CGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 36023 | 0.67 | 0.312117 |
Target: 5'- ---cCAGCAGCgucaccUCGGCGCcgGCgaGGCGCa -3' miRNA: 3'- acuaGUCGUCG------AGCCGCG--CG--UCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 40756 | 0.67 | 0.312117 |
Target: 5'- cGAUC-GCcGUU-GGCGCGCcGCGCGc -3' miRNA: 3'- aCUAGuCGuCGAgCCGCGCGuCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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