Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28126 | 5' | -56.2 | NC_005887.1 | + | 38628 | 0.66 | 0.557596 |
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Target: 5'- uUCGGGU-UCAACgCGAacaACAUCGGGc -3' miRNA: 3'- uAGCCCGaAGUUGgGCU---UGUGGCCUa -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 40509 | 0.67 | 0.503182 |
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Target: 5'- uUCGGGa-UCAugUCGAGCGCCGa-- -3' miRNA: 3'- uAGCCCgaAGUugGGCUUGUGGCcua -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 4604 | 0.67 | 0.502116 |
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Target: 5'- cGUCGGuGCUcaucgccUCGACCgGGACGCCGc-- -3' miRNA: 3'- -UAGCC-CGA-------AGUUGGgCUUGUGGCcua -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 8188 | 0.67 | 0.471656 |
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Target: 5'- gGUCGGGCagUUCGaugucuACCCGcGCACCGa-- -3' miRNA: 3'- -UAGCCCG--AAGU------UGGGCuUGUGGCcua -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 28474 | 0.68 | 0.451205 |
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Target: 5'- -cCGGGCcgcUUCAGCUCGAcgaaguagacgcGCGCCGGc- -3' miRNA: 3'- uaGCCCG---AAGUUGGGCU------------UGUGGCCua -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 41726 | 0.68 | 0.451205 |
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Target: 5'- -aCGGGCggCGAUCCGAucccgGCGCgCGGGc -3' miRNA: 3'- uaGCCCGaaGUUGGGCU-----UGUG-GCCUa -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 11377 | 0.69 | 0.39294 |
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Target: 5'- -gCGGGCgucagcgCAGCCgGAGCGCUGGc- -3' miRNA: 3'- uaGCCCGaa-----GUUGGgCUUGUGGCCua -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 41817 | 0.7 | 0.339788 |
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Target: 5'- gAUCGuGGuCUUCGaccagaGCCCGcGCGCCGGGa -3' miRNA: 3'- -UAGC-CC-GAAGU------UGGGCuUGUGGCCUa -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 12679 | 0.71 | 0.292044 |
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Target: 5'- gGUCGGGCUUCugcgucagcACgCCGAGCgucgcgGCCGGGUc -3' miRNA: 3'- -UAGCCCGAAGu--------UG-GGCUUG------UGGCCUA- -5' |
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| 28126 | 5' | -56.2 | NC_005887.1 | + | 11579 | 1.03 | 0.001336 |
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Target: 5'- aAUCGGGCUUCAACCCGAACACCGGAUc -3' miRNA: 3'- -UAGCCCGAAGUUGGGCUUGUGGCCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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