miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28127 5' -63.4 NC_005887.1 + 27405 0.66 0.225816
Target:  5'- -gCGCCGCuGCGCGUGGCGCaGU-CGAc -3'
miRNA:   3'- aaGCGGCG-CGCGUGCCGCG-CGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 21815 0.66 0.225816
Target:  5'- -cCGCgGCGCuGC-CgGGCGCGC-CGAAu -3'
miRNA:   3'- aaGCGgCGCG-CGuG-CCGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 29782 0.66 0.225816
Target:  5'- aUCGCCGCGuCGCGCagcucgGGCcaguaGCugGAAg -3'
miRNA:   3'- aAGCGGCGC-GCGUG------CCGcg---CGugCUU- -5'
28127 5' -63.4 NC_005887.1 + 41607 0.66 0.225816
Target:  5'- cUUCGCgUGCGCGC-CGaGCGCcuCGCGGAu -3'
miRNA:   3'- -AAGCG-GCGCGCGuGC-CGCGc-GUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 39853 0.66 0.225816
Target:  5'- -aCGaCGCGCGCAacgauCGGCGCGagcgcCGCGAc -3'
miRNA:   3'- aaGCgGCGCGCGU-----GCCGCGC-----GUGCUu -5'
28127 5' -63.4 NC_005887.1 + 6811 0.66 0.225816
Target:  5'- -aCGCUGCGCGacUGGCGCuacgugGCGCGGGu -3'
miRNA:   3'- aaGCGGCGCGCguGCCGCG------CGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 16472 0.66 0.22005
Target:  5'- cUCGaCCGCGCgGCAggaucCGGCGgGCugGu- -3'
miRNA:   3'- aAGC-GGCGCG-CGU-----GCCGCgCGugCuu -5'
28127 5' -63.4 NC_005887.1 + 27016 0.66 0.22005
Target:  5'- cUUCG-UGUGCGCAaccuCGGCgaGCGCGCGAc -3'
miRNA:   3'- -AAGCgGCGCGCGU----GCCG--CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 42178 0.66 0.21948
Target:  5'- aUUGCgaauuCGCGCGCGCuGGCucgucgcauugcuGCGCGCGGu -3'
miRNA:   3'- aAGCG-----GCGCGCGUG-CCG-------------CGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 23501 0.67 0.21441
Target:  5'- cUUGCCGaCGUGUuCGGcCGCGCugACGAAc -3'
miRNA:   3'- aAGCGGC-GCGCGuGCC-GCGCG--UGCUU- -5'
28127 5' -63.4 NC_005887.1 + 4734 0.67 0.21441
Target:  5'- cUCGCCGUcuGCGCAgCGGUcUGCGCGu- -3'
miRNA:   3'- aAGCGGCG--CGCGU-GCCGcGCGUGCuu -5'
28127 5' -63.4 NC_005887.1 + 18371 0.67 0.21441
Target:  5'- -gCGUagacgGCGCGC-CGGCGCuCGCGAAc -3'
miRNA:   3'- aaGCGg----CGCGCGuGCCGCGcGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 8108 0.67 0.21441
Target:  5'- cUCGCCGCGCuCGCcgaGGCGcCGCuguuCGGGu -3'
miRNA:   3'- aAGCGGCGCGcGUG---CCGC-GCGu---GCUU- -5'
28127 5' -63.4 NC_005887.1 + 25536 0.67 0.208894
Target:  5'- gUCGCCGC-CGaGCGGUGCGCGu--- -3'
miRNA:   3'- aAGCGGCGcGCgUGCCGCGCGUgcuu -5'
28127 5' -63.4 NC_005887.1 + 13513 0.67 0.208894
Target:  5'- gUCGCCGgcaCGgGCAUGcGCGC-CACGAu -3'
miRNA:   3'- aAGCGGC---GCgCGUGC-CGCGcGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 12485 0.67 0.208894
Target:  5'- aUCG-CGCGCGCGCGGUGUcguugcccuGCugGu- -3'
miRNA:   3'- aAGCgGCGCGCGUGCCGCG---------CGugCuu -5'
28127 5' -63.4 NC_005887.1 + 29539 0.67 0.208894
Target:  5'- -aCGUCGCGCGCgACGGCcugGCACa-- -3'
miRNA:   3'- aaGCGGCGCGCG-UGCCGcg-CGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 14699 0.67 0.203501
Target:  5'- cUCGUCGCgGCGgGCGGgcCGgGCGCGGc -3'
miRNA:   3'- aAGCGGCG-CGCgUGCC--GCgCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 14540 0.67 0.203501
Target:  5'- gUCgGCgGCGCGUcgauCGGCaugucGCGCGCGGAa -3'
miRNA:   3'- aAG-CGgCGCGCGu---GCCG-----CGCGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 11097 0.67 0.203501
Target:  5'- -gCGUgGCGCaucgGC-UGGUGCGCGCGAAg -3'
miRNA:   3'- aaGCGgCGCG----CGuGCCGCGCGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.