miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 3' -51.8 NC_005887.1 + 8994 0.66 0.812728
Target:  5'- aAGCuGCUGCGCAcaagcgcGACGACGUuuucucugCAGCCc -3'
miRNA:   3'- gUCG-UGGCGCGU-------UUGUUGCA--------GUUGGu -5'
28128 3' -51.8 NC_005887.1 + 39390 0.66 0.803764
Target:  5'- aGGCcgGCgGCGCAAcCGugGUCGcgACCGc -3'
miRNA:   3'- gUCG--UGgCGCGUUuGUugCAGU--UGGU- -5'
28128 3' -51.8 NC_005887.1 + 22262 0.66 0.803764
Target:  5'- aCGGUGgCGCGCAGcagGCGAucggauuucuCGUCGGCCu -3'
miRNA:   3'- -GUCGUgGCGCGUU---UGUU----------GCAGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 27580 0.66 0.803764
Target:  5'- aAGUACaGCGCGAGCGcgcCGUCGAgCGu -3'
miRNA:   3'- gUCGUGgCGCGUUUGUu--GCAGUUgGU- -5'
28128 3' -51.8 NC_005887.1 + 25072 0.66 0.803764
Target:  5'- gCGGcCGCCgGCGCGAGCuGACGcUCGGCa- -3'
miRNA:   3'- -GUC-GUGG-CGCGUUUG-UUGC-AGUUGgu -5'
28128 3' -51.8 NC_005887.1 + 21867 0.66 0.802758
Target:  5'- gCAGCGCCGCG-----GACGUCGuguugauGCCGg -3'
miRNA:   3'- -GUCGUGGCGCguuugUUGCAGU-------UGGU- -5'
28128 3' -51.8 NC_005887.1 + 4670 0.66 0.802758
Target:  5'- gCAGacCGCUGCGCAGACGGCGagGgucugaugggcgcGCCGa -3'
miRNA:   3'- -GUC--GUGGCGCGUUUGUUGCagU-------------UGGU- -5'
28128 3' -51.8 NC_005887.1 + 2593 0.66 0.80074
Target:  5'- aCAGCGCCuuGCGCAGcguGCGGCaGUCcgggugcacgagcaGGCCGg -3'
miRNA:   3'- -GUCGUGG--CGCGUU---UGUUG-CAG--------------UUGGU- -5'
28128 3' -51.8 NC_005887.1 + 8789 0.66 0.793616
Target:  5'- aCGGCAUCGCGUAuauGCucgaguuCGgCGACCAc -3'
miRNA:   3'- -GUCGUGGCGCGUu--UGuu-----GCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 8118 0.66 0.793616
Target:  5'- -uGCGCa-CGCAGACAcGCGUCGAgCAc -3'
miRNA:   3'- guCGUGgcGCGUUUGU-UGCAGUUgGU- -5'
28128 3' -51.8 NC_005887.1 + 23393 0.66 0.793616
Target:  5'- -cGCGCUGcCGCuGGCAgccugcagcagcGCGUCGAUCAg -3'
miRNA:   3'- guCGUGGC-GCGuUUGU------------UGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 40205 0.66 0.793616
Target:  5'- gAGCGCgGCGC--GCAGCG-CGcACCGc -3'
miRNA:   3'- gUCGUGgCGCGuuUGUUGCaGU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 37388 0.66 0.793616
Target:  5'- cCAGUGCCgGCGCu-GCuGCGaCGACCGa -3'
miRNA:   3'- -GUCGUGG-CGCGuuUGuUGCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 33217 0.66 0.793616
Target:  5'- aAGCACCGcCGCG-GCAcgGUCGGCUg -3'
miRNA:   3'- gUCGUGGC-GCGUuUGUugCAGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 23078 0.66 0.793616
Target:  5'- -cGcCACCGCcucgcagaaGCGAcCGGCGUCGAUCAg -3'
miRNA:   3'- guC-GUGGCG---------CGUUuGUUGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 36374 0.66 0.792591
Target:  5'- gCGGCgucgaccGCCGCGCAGAuCGGC--CAACCGg -3'
miRNA:   3'- -GUCG-------UGGCGCGUUU-GUUGcaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 11355 0.66 0.787437
Target:  5'- gAGCACacugagccugaucaGCGCGGGCGucaGCG-CAGCCGg -3'
miRNA:   3'- gUCGUGg-------------CGCGUUUGU---UGCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 2930 0.66 0.783282
Target:  5'- -cGCcaaGCUGCGCAAGCGccGCGgcaccgccgCGACCAu -3'
miRNA:   3'- guCG---UGGCGCGUUUGU--UGCa--------GUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 3857 0.66 0.783282
Target:  5'- uCGGCACCGaCGauguguACGGCGgCAGCCc -3'
miRNA:   3'- -GUCGUGGC-GCguu---UGUUGCaGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 39173 0.66 0.783282
Target:  5'- aCGGaCGCgCGCGagauccCGAAC-ACGUCGGCCAa -3'
miRNA:   3'- -GUC-GUG-GCGC------GUUUGuUGCAGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.