miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 5' -60.6 NC_005887.1 + 27572 0.66 0.377968
Target:  5'- cGCAGCGgaaguACAgCGCGaGCGCGcCGuCGAg -3'
miRNA:   3'- cCGUUGC-----UGUgGCGC-CGCGC-GC-GCUa -5'
28128 5' -60.6 NC_005887.1 + 14704 0.66 0.377968
Target:  5'- cGCGGCGGgcggGCCG-GGCGCG-GCGAUc -3'
miRNA:   3'- cCGUUGCUg---UGGCgCCGCGCgCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 16117 0.66 0.377968
Target:  5'- -cCggUGGCGCUGCGcCGCGCGCa-- -3'
miRNA:   3'- ccGuuGCUGUGGCGCcGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 23648 0.66 0.372779
Target:  5'- aGGCuguACG-CGCUGaUugucggagauaauccGGCGCGCGCGAa -3'
miRNA:   3'- -CCGu--UGCuGUGGC-G---------------CCGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 12773 0.66 0.369347
Target:  5'- uGCugcGCGAC-CaGCGuGCGCGCGUGAc -3'
miRNA:   3'- cCGu--UGCUGuGgCGC-CGCGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 31009 0.66 0.369347
Target:  5'- gGGCGcCGACaucACCGcCGaGCGCGCugugcacaagGCGAUg -3'
miRNA:   3'- -CCGUuGCUG---UGGC-GC-CGCGCG----------CGCUA- -5'
28128 5' -60.6 NC_005887.1 + 21263 0.66 0.369347
Target:  5'- -uCGGgGGCACCGCGGCgGCG-GCGu- -3'
miRNA:   3'- ccGUUgCUGUGGCGCCG-CGCgCGCua -5'
28128 5' -60.6 NC_005887.1 + 21184 0.66 0.369347
Target:  5'- uGGCGuugGCGAgCACCguguuuGCGGCGacCGCGcCGAUa -3'
miRNA:   3'- -CCGU---UGCU-GUGG------CGCCGC--GCGC-GCUA- -5'
28128 5' -60.6 NC_005887.1 + 24879 0.66 0.369347
Target:  5'- aGGCGGCGGCcgaUGCcGCGCGCuCGGUc -3'
miRNA:   3'- -CCGUUGCUGug-GCGcCGCGCGcGCUA- -5'
28128 5' -60.6 NC_005887.1 + 26783 0.66 0.369347
Target:  5'- cGGUcuaugucgAGCuGC-CCGCGGC-CGCGCGAc -3'
miRNA:   3'- -CCG--------UUGcUGuGGCGCCGcGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 11187 0.66 0.368492
Target:  5'- cGCcACGGCGCCuCGGCcagcuucGCGCGCa-- -3'
miRNA:   3'- cCGuUGCUGUGGcGCCG-------CGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 34359 0.66 0.366787
Target:  5'- cGGCuggaGACGAgCGCCccgcguaucagaguGCGGcCGgGCGCGAg -3'
miRNA:   3'- -CCG----UUGCU-GUGG--------------CGCC-GCgCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 20821 0.66 0.360861
Target:  5'- cGCAACG-UugC-CGGCGCGUGCa-- -3'
miRNA:   3'- cCGUUGCuGugGcGCCGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 14530 0.66 0.360861
Target:  5'- aGGC-GCGGCcguCgGCGGCGCGU-CGAUc -3'
miRNA:   3'- -CCGuUGCUGu--GgCGCCGCGCGcGCUA- -5'
28128 5' -60.6 NC_005887.1 + 8485 0.66 0.360861
Target:  5'- cGGCGACGACA-CGUGGCucgaguCGCGUa-- -3'
miRNA:   3'- -CCGUUGCUGUgGCGCCGc-----GCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 16593 0.66 0.352512
Target:  5'- cGCGcccacuCGGCGCCgGCGGCGa-CGCGAUc -3'
miRNA:   3'- cCGUu-----GCUGUGG-CGCCGCgcGCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 41597 0.66 0.352512
Target:  5'- aGCGGCGGC-CCagguGCGGCGgccgGCGCGGc -3'
miRNA:   3'- cCGUUGCUGuGG----CGCCGCg---CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 12820 0.66 0.352512
Target:  5'- cGGCGguguucucGCGuuGCAgCGCGGCGCGauCGAg -3'
miRNA:   3'- -CCGU--------UGC--UGUgGCGCCGCGCgcGCUa -5'
28128 5' -60.6 NC_005887.1 + 25013 0.66 0.344301
Target:  5'- cGCAagGCGGC-CCGCGcGCaccGCGuCGCGAUc -3'
miRNA:   3'- cCGU--UGCUGuGGCGC-CG---CGC-GCGCUA- -5'
28128 5' -60.6 NC_005887.1 + 11618 0.66 0.344301
Target:  5'- cGCGAC--CGCCGCGcGCuGCGCGcCGAg -3'
miRNA:   3'- cCGUUGcuGUGGCGC-CG-CGCGC-GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.