miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2813 3' -60.6 NC_001491.2 + 69250 0.67 0.664733
Target:  5'- cACCACUaacgcaGCCGCGGU--CCAUCAgCCGg -3'
miRNA:   3'- -UGGUGG------UGGCGCCGauGGUGGU-GGCg -5'
2813 3' -60.6 NC_001491.2 + 9938 0.67 0.664733
Target:  5'- uACCGCCAgaaGCGGacgaACCGCagcaGCCGCc -3'
miRNA:   3'- -UGGUGGUgg-CGCCga--UGGUGg---UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 97069 0.67 0.664733
Target:  5'- gGCCACgCGCUaGgGGCUAgguCUGCCAgCGCg -3'
miRNA:   3'- -UGGUG-GUGG-CgCCGAU---GGUGGUgGCG- -5'
2813 3' -60.6 NC_001491.2 + 60114 0.67 0.654854
Target:  5'- uCCGCCGCCGCGcGCcGCUcggagGCUACacugaGCg -3'
miRNA:   3'- uGGUGGUGGCGC-CGaUGG-----UGGUGg----CG- -5'
2813 3' -60.6 NC_001491.2 + 69314 0.67 0.654854
Target:  5'- cGCCAgCCcaGCCgucaGCGGCaGCCGCCGUCGUg -3'
miRNA:   3'- -UGGU-GG--UGG----CGCCGaUGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 58783 0.67 0.644958
Target:  5'- uGCCGCaaaCACCGCGGuCUGa-ACCAUCGg -3'
miRNA:   3'- -UGGUG---GUGGCGCC-GAUggUGGUGGCg -5'
2813 3' -60.6 NC_001491.2 + 147920 0.67 0.644958
Target:  5'- cGCCgagaGCCGCCGgGGCgggagGCCGggaguCCGCCcaGCa -3'
miRNA:   3'- -UGG----UGGUGGCgCCGa----UGGU-----GGUGG--CG- -5'
2813 3' -60.6 NC_001491.2 + 138312 0.67 0.63208
Target:  5'- gGCCACCACCcccucgaccggcacGCGGCacGgCACC-UCGCu -3'
miRNA:   3'- -UGGUGGUGG--------------CGCCGa-UgGUGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 148946 0.67 0.625144
Target:  5'- gGCCA-CGCCGgGGCUcggGCCggggugcucaACCACCaGCu -3'
miRNA:   3'- -UGGUgGUGGCgCCGA---UGG----------UGGUGG-CG- -5'
2813 3' -60.6 NC_001491.2 + 42554 0.67 0.625144
Target:  5'- -gCACUGCCGCGuaUAUCuCgGCCGCa -3'
miRNA:   3'- ugGUGGUGGCGCcgAUGGuGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 65450 0.67 0.625144
Target:  5'- uGCCAaggucguaGCCGCuuCUACCGCC-CCGCa -3'
miRNA:   3'- -UGGUgg------UGGCGccGAUGGUGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 123290 0.68 0.615242
Target:  5'- uGCgGCCGCUGacuCGGCgugggucuCCACCggcGCCGCg -3'
miRNA:   3'- -UGgUGGUGGC---GCCGau------GGUGG---UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 106871 0.68 0.615242
Target:  5'- gACCugCGCgugaCGCuGGCUAaauUCACCAUUGCg -3'
miRNA:   3'- -UGGugGUG----GCG-CCGAU---GGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 140090 0.68 0.615242
Target:  5'- cGCCggGCCGCCcGCGGaggccugGCCGCgcgugUACCGCa -3'
miRNA:   3'- -UGG--UGGUGG-CGCCga-----UGGUG-----GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 144771 0.68 0.605351
Target:  5'- gACCACCGCCGgGGUggagAgcggagcgucguCCACC-CCGa -3'
miRNA:   3'- -UGGUGGUGGCgCCGa---U------------GGUGGuGGCg -5'
2813 3' -60.6 NC_001491.2 + 138130 0.68 0.604363
Target:  5'- cUCGCCGCUggaguugGCGGCccccccgGCCGCgGCUGCg -3'
miRNA:   3'- uGGUGGUGG-------CGCCGa------UGGUGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 2311 0.68 0.585632
Target:  5'- aAUCACCGCgggGCGGCcgcACUACCAUCGg -3'
miRNA:   3'- -UGGUGGUGg--CGCCGa--UGGUGGUGGCg -5'
2813 3' -60.6 NC_001491.2 + 18334 0.68 0.585632
Target:  5'- gGCCAUCACaGCGGCauCCAUaaCAUCGCu -3'
miRNA:   3'- -UGGUGGUGgCGCCGauGGUG--GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 80515 0.68 0.585632
Target:  5'- uCCGgCGCgGCGGUUGCCAgCACgGg -3'
miRNA:   3'- uGGUgGUGgCGCCGAUGGUgGUGgCg -5'
2813 3' -60.6 NC_001491.2 + 51259 0.68 0.585632
Target:  5'- gGCCugguCCcCCuggGCGGCUGCCGCCAgCa- -3'
miRNA:   3'- -UGGu---GGuGG---CGCCGAUGGUGGUgGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.